Detail information of GWHGAAEX009788/evm.TU.scaffold_258.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110637960|ref|YP_678167.1| | 3.00E-22 | DNA helicase [Cytophaga hutchinsonii ATCC 33406] |
| KOG | KOG1806 | 0 | DEAD box containing helicases |
| nr | gi|743773120|ref|XP_010916892.1| | 0 | PREDICTED: intron-binding protein aquarius isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FJR0|RENT1_ARATH | 2.00E-24 | Regulator of nonsense transcripts 1 homolog |
| trEMBL | tr|F6HMW8|F6HMW8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55993.1} |
| TAIR | AT2G38770 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000259 | 394641 | 421672 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009788
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16399.4 | Aquarius_N | 58 | 877 | 0 |
| PF13086.5 | AAA_11 | 890 | 1178 | 1.80E-27 |
| PF13087.5 | AAA_12 | 1187 | 1377 | 9.70E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12874 | AQR | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0005681 | Cellular Component | spliceosomal complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.200 |
| SRR2545915 | Juvenile tuber | 39.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.310 |
| SRR5643514 | five period of Gastrodia elata | 32.630 | |
| SRR5643515 | five period of Gastrodia elata | 30.720 | |
| SRR5643524 | five period of Gastrodia elata | 32.390 | |
| SRR5643525 | five period of Gastrodia elata | 31.380 | |
| SRR5643528 | five period of Gastrodia elata | 30.450 | |
| SRR5643658 | five period of Gastrodia elata | 36.370 | |
| SRR5643659 | five period of Gastrodia elata | 30.590 | |
| SRR5643660 | five period of Gastrodia elata | 33.630 | |
| SRR5643661 | five period of Gastrodia elata | 28.210 | |
| SRR5643662 | five period of Gastrodia elata | 30.790 | |
| SRR5643663 | five period of Gastrodia elata | 31.290 | |
| SRR5643664 | five period of Gastrodia elata | 34.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 41.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.49 |
| Juven | Juvenile tuber | 38.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 79.26 | |
| Mother_Juven | Mother tuber of Juvenile | 45.15 |