Detail information of GWHGAAEX009794/evm.TU.scaffold_258.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470182683|ref|YP_007568558.1| | 3.00E-74 | Amine oxidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
| KOG | KOG0029 | 0 | Amine oxidase |
| nr | gi|720089294|ref|XP_010244717.1| | 0 | PREDICTED: probable polyamine oxidase 2 [Nelumbo nucifera] |
| Swissprot | tr|Q9SKX5|PAO2_ARATH | 0 | Probable polyamine oxidase 2 |
| trEMBL | tr|Q01KC7|Q01KC7_ORYSA | 0 | H0215F08.3 protein {ECO:0000313|EMBL:CAH66792.1} |
| TAIR | AT2G43020 | 0 | polyamine oxidase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000259 | 496188 | 514347 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009794
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 31 | 450 | 1.00E-92 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17839 | PAO4, PAO3, PAO2 | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 | ||
| beta-Alanine metabolism | map00410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 154.930 |
| SRR2545915 | Juvenile tuber | 124.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 90.700 |
| SRR5643514 | five period of Gastrodia elata | 83.870 | |
| SRR5643515 | five period of Gastrodia elata | 70.900 | |
| SRR5643524 | five period of Gastrodia elata | 79.930 | |
| SRR5643525 | five period of Gastrodia elata | 141.740 | |
| SRR5643528 | five period of Gastrodia elata | 125.020 | |
| SRR5643658 | five period of Gastrodia elata | 126.350 | |
| SRR5643659 | five period of Gastrodia elata | 74.750 | |
| SRR5643660 | five period of Gastrodia elata | 86.340 | |
| SRR5643661 | five period of Gastrodia elata | 74.790 | |
| SRR5643662 | five period of Gastrodia elata | 93.280 | |
| SRR5643663 | five period of Gastrodia elata | 82.940 | |
| SRR5643664 | five period of Gastrodia elata | 113.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 105.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 88.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 83.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 127.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 111.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 117.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 103.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 95.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 87.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 87.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 87.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 98.08 |
| Juven | Juvenile tuber | 135.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 161.27 | |
| Mother_Juven | Mother tuber of Juvenile | 175.78 |