Gene detail

Detail information of GWHGAAEX009799/evm.TU.scaffold_258.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428320931\|ref\|YP_007118813.1\|	1.00E-17	putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112]
KOG	KOG0027	5.00E-85	Calmodulin and related proteins (EF-Hand superfamily)
nr	gi\|743871596\|ref\|XP_011033898.1\|	7.16E-91	PREDICTED: probable calcium-binding protein CML13 [Populus euphratica]
Swissprot	tr\|Q84VG0\|CML7_ORYSJ	1.00E-85	Probable calcium-binding protein CML7
trEMBL	tr\|B9GVS4\|B9GVS4_POPTR	3.00E-91	Calmodulin family protein {ECO:0000313\|EMBL:EEE79414.1}
TAIR	AT1G12310	5.00E-85	Calcium-binding EF-hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000259	611195	612206	-

Transcript Sequence
>GWHTAAEX009799 GCTTGTTTAATTTTGTAAAATCCAATTAACGTGCTCGAATCTCTACTATTTAAGGCAAATTTGCAGAGATGGCGGATTTGTTCATCTACCCTTCGGTTTTGACGAAATTAGGGTTGCCGAACGGAGTAGGGCGGTTCGAACGACGATAGGAGCAAGACAGAAAGATTTTAGTAATGGGGAAGGATCTCTCCGAAGAGCAGGTAGCATCTATGCGGCAGGCATTTACGCTCTTCGATACGGACGGAGATGGCCGGATCGCGCCATCGGAGCTTGGAATCCTGATGCGATCTCTTGGTGGGAATCCAACGCAAGCACAACTGAAGTCGATAGTGGCTGAGGAGGGGCTAACAGCGCCCTTTGATTTCCCCCGATTTCTGGAGCTGATGCGGAAGCACTTAAAAGCCGAGCCCTATGATCGCCAACTCCGAGACGCTTTCAAGGTCCTCGATAAGGATTCTACTGGCTTCGTCTCAGTTGCTGATCTTCGCCATGTCCTTACCTCTATTGGCGAGAAGCTCGAGCTGCATGAGTTCGACGAGTGGATCCGCGAGGTTGATGTCGGCAGCGATGGAAACATCCGTTATGAGGACTTCATCTTGCGAATGGTCGCCAAGTGATCGGGCTTTGTGATGTGTGATATTTTTTTGTCAATCTTTCATATATTATATCTTTCATGTTTGGAGATCTGATGGTTTGAGGTTTGCTGGAGCTTTTACAGATCTCATATGTGGGCTGCTTGTTTGTCGTGGAAGATTAAAGATCTATGTGATCGCATTTGTTCTTTTCTATCGCTGTTATTTTATAACGTTTTGGCAGTGTTAAATGAAACATTTGATCACGGCAATGTTCTTATACATGTTCAATTTTAAATGTTTTTATTTTCTTAGCTGTTCATGCGAATTAATTCTCATCTCTGCAAATCACCCAAATTTGCTGTTTGTTTGCTCATATCTTGCATCAAAAAGTTGATTTTTATAAATAATACCCCTGTTTTTATTGTTTATGTCAAAAC

Network for GWHGAAEX009799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13405.5	EF-hand_6	13	41	5.20E-07
PF13499.5	EF-hand_7	82	141	1.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.130
SRP064423	SRR2545915	Juvenile tuber	63.850
SRP108465	SRR5643513	five period of Gastrodia elata	138.430
	SRR5643514	five period of Gastrodia elata	126.930
	SRR5643515	five period of Gastrodia elata	124.760
	SRR5643524	five period of Gastrodia elata	116.570
	SRR5643525	five period of Gastrodia elata	215.800
	SRR5643528	five period of Gastrodia elata	197.990
	SRR5643658	five period of Gastrodia elata	220.680
	SRR5643659	five period of Gastrodia elata	139.070
	SRR5643660	five period of Gastrodia elata	135.580
	SRR5643661	five period of Gastrodia elata	127.400
	SRR5643662	five period of Gastrodia elata	133.340
	SRR5643663	five period of Gastrodia elata	102.510
	SRR5643664	five period of Gastrodia elata	103.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	122.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	156.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	160.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	109.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	130.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	102.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	117.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	117.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	171.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	150.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	203.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	203.530
SRP279888	Gastro	Gastrodia elata tuber	140.57
	Juven	Juvenile tuber	83.07
	Mother_Gastro	Mother tuber of Gastrodia elata	119.60
	Mother_Juven	Mother tuber of Juvenile	69.90