Detail information of GWHGAAEX009808/evm.TU.scaffold_26.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-38 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672119029|ref|XP_008782739.1| | 0 | PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Phoenix dactylifera] |
| Swissprot | tr|Q9LT96|Y5977_ARATH | 0 | Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor) |
| trEMBL | tr|B9IH00|B9IH00_POPTR | 0 | Leucine-rich repeat transmembrane protein kinase {ECO:0000313|EMBL:EEF05463.2} |
| TAIR | AT1G79620 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 109499 | 117863 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 626 | 890 | 8.00E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VIII-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.640 |
| SRR2545915 | Juvenile tuber | 2.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.920 |
| SRR5643514 | five period of Gastrodia elata | 3.280 | |
| SRR5643515 | five period of Gastrodia elata | 2.130 | |
| SRR5643524 | five period of Gastrodia elata | 2.670 | |
| SRR5643525 | five period of Gastrodia elata | 0.550 | |
| SRR5643528 | five period of Gastrodia elata | 0.610 | |
| SRR5643658 | five period of Gastrodia elata | 0.460 | |
| SRR5643659 | five period of Gastrodia elata | 0.320 | |
| SRR5643660 | five period of Gastrodia elata | 0.280 | |
| SRR5643661 | five period of Gastrodia elata | 0.490 | |
| SRR5643662 | five period of Gastrodia elata | 0.280 | |
| SRR5643663 | five period of Gastrodia elata | 0.250 | |
| SRR5643664 | five period of Gastrodia elata | 0.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.49 |
| Juven | Juvenile tuber | 0.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.58 | |
| Mother_Juven | Mother tuber of Juvenile | 0.56 |