Detail information of GWHGAAEX009812/evm.TU.scaffold_26.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743782972|ref|XP_010921288.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LVD3|PP434_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g57250, mitochondrial (Precursor) |
| trEMBL | tr|U5FJB0|U5FJB0_POPTR | 0 | Cytochrome P450 71B10 family protein {ECO:0000313|EMBL:ERP49986.1} |
| TAIR | AT5G57250 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 325536 | 329336 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009812
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 170 | 198 | 0.038 |
| PF01535.19 | PPR | 242 | 272 | 0.00067 |
| PF01535.19 | PPR | 277 | 306 | 0.56 |
| PF13041.5 | PPR_2 | 309 | 358 | 2.70E-15 |
| PF13041.5 | PPR_2 | 380 | 428 | 1.60E-13 |
| PF13041.5 | PPR_2 | 480 | 528 | 1.60E-11 |
| PF01535.19 | PPR | 556 | 582 | 0.067 |
| PF12854.6 | PPR_1 | 752 | 785 | 1.90E-08 |
| PF13041.5 | PPR_2 | 791 | 839 | 4.50E-15 |
| PF13041.5 | PPR_2 | 861 | 910 | 3.40E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.690 |
| SRR2545915 | Juvenile tuber | 17.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.590 |
| SRR5643514 | five period of Gastrodia elata | 9.200 | |
| SRR5643515 | five period of Gastrodia elata | 11.730 | |
| SRR5643524 | five period of Gastrodia elata | 10.900 | |
| SRR5643525 | five period of Gastrodia elata | 7.470 | |
| SRR5643528 | five period of Gastrodia elata | 6.290 | |
| SRR5643658 | five period of Gastrodia elata | 6.810 | |
| SRR5643659 | five period of Gastrodia elata | 14.230 | |
| SRR5643660 | five period of Gastrodia elata | 12.040 | |
| SRR5643661 | five period of Gastrodia elata | 13.510 | |
| SRR5643662 | five period of Gastrodia elata | 13.050 | |
| SRR5643663 | five period of Gastrodia elata | 12.130 | |
| SRR5643664 | five period of Gastrodia elata | 11.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.20 |
| Juven | Juvenile tuber | 10.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.19 | |
| Mother_Juven | Mother tuber of Juvenile | 12.42 |