Gene detail

Detail information of GWHGAAEX009824/evm.TU.scaffold_26.26

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	2.00E-64	Transcription factor, Myb superfamily
nr	gi\|743783069\|ref\|XP_010921312.1\|	3.04E-97	PREDICTED: transcription factor LAF1-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	6.00E-36	Transcription factor MYB44
trEMBL	tr\|B9IPV5\|B9IPV5_POPTR	6.00E-92	Uncharacterized protein {ECO:0000313\|EMBL:EEF00249.2}
TAIR	AT1G69560	2.00E-64	myb domain protein 105

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	909480	911982	-

Transcript Sequence
>GWHTAAEX009824 GCAAGTTCAATAGAACCCAAATACATGAAAACGAAAACTAAGAGAAATCAAATTTATGCATAAACATGATTACAAAAAAAAAAAATTATAACACAGGAATTATGCAAAGCAGGGCGGGTTCGCCATCTTTCAAGTTTCATGCTCACATAATATAAAGAGTATATCATCTTTTTAACAGCCTATGATGATGAAAGGATCTTGATTCCCAAATAGCAATTTTAAAATTTAAATCTTATCTAATTTTCACAGTCGATATAACTCAATTTTTGATTAATTTGTTTTTTATTATTTTCTTTATAAGATTGAGTTTCCAGGCTACGAGACAAGACGAACGGCCCTGAATGACATTACTTATGAGAGGGGGAGAGAGAGTGAGTGTGGAGGACGCCAACAATCCACACGAGCGGCTTCGTTTTGATACTCTCTGCATGCGACCCCCAATGCCTTCAGAGGCAAAGCCATCAGTCTCAAAGTAAGCGAGGCAGAGAAACAGAGCGACAGACGGAGAGAGAGAAGAAAGTGGGAATAATTATCTTGGTTTTTTCTCCACTAAAGCCTGTTCCTATCTTGTTCTTTATCCTGGAGCCTCTCTAATTAACCCTTCTTCTCTTCTGACTTCTCAAATGCTCTGCATCGAAGAAGATCAAAGAAATTTGGAATAGTTTTTGTATGTGTGATGAGTGCTGGAGAACTTGAAACTGTTCCGAAGAAGGTTGAAAGCTCCTTTCTTTTTGCATAAGATTCGGAAAGTTCTTCTTTTTTTATTTTGTTGTCCTCTTGAAAAGTAGAGGATTGGGAGACATGGAGTTCTCTCCTCCTCCTACGCCTCCTGTGTTTTCTTCTGCGGGAGATGGATGGGTGAATGAGGCTTGGTTTCAGATGGAGAAGCGGCAACATTTGAGCGGCGGATCAGGCTCTTATATAAGTGAGAAAAATGGGCAGAGTGAGGAACTTGAAAGCGGGCATTCAAAGCTCTGTGCTAGAGGCCACTGGAGACCAGCGGAGGATGCCAAGCTTAGAGAACTTGTTGCCCAATACGGGCCTCAAAACTGGAATCTTATTGCTGAGAATCTTCAAGGAAGATCTGGGAAGAGCTGCAGATTGCGATGGTTCAACCAGCTAGACCCCAAGATTAACAAGAAGGCTTTCACTGAGGAAGAAGAGGAAAGGCTTCTCTCCGCCCACAGACTGTATGGAAACAAATGGGCACTGATCGCCAGGTATTTTCCAGGAAGAACTGATAATGCTGTGAAGAATCACTGGCATGTTATTATTGCAAGGAAGAACAGGGAACACTCCATCGGTCCTAGAAGGAAAAAGCCCTCAAAATCCGTTCCATCTCCTTCCTCCAATGCATTTGATGAGAAGCTTCATACCAATTGCCCCAACAAAGCCATCTCCGGCAATGGAGACTGGCCATTTTCCACCTGCACTGTCCTCACCCTCACCTCCCCTTCGCACAGAAGCCTTCCTGCTCGTACATTCTTCACAAGACACACCCCTCTAAAGCACCCTCTGCAATTACAGTATCTGGCGGGATTTGGTGAAGAGTTTGTAAATACAGAATATGTGCGTTCTCAGAGACCTCTTGATTCTGGAAATGTGTTTCTTCATGGTGGTTTCCCTGTTGCTTTAGTGCCTGGAACTGATCAGTCTGGCTACTCTGATTCTAATTCGGAGGCTTCCGCAGCTGAATCAGTGATCATTAAGAAAGGCAAGGCCTTTATTCTTGATGACGCAGATAACGACAGTGAGAAGATTGGCTTGCCCTTTATTGATTTCCTTGGCGTTGGAACCACATAGGGAAGTCGTTCTGCTACTGATGAAGTCTGATGAATTTGATGTACAGTAAATTTTAGAAGATGAACTTATGGTTAAGAAAAAAAGTGGGAAATACAAATGCGAAATTAAAAGTCATTGAGAATGAAATCCTTCGCTTCACTTGCTTGTTGTTTAGGGCACTTCTTTCTCCTGAGCTTTTAGCCCCTGTTTTGAACTTTGTTTCTTTCTGTCAAACCACAAATGGTACGCTGCTTCATCATTCTGACAGTCATTTTATTTATGAGTGGTGAACCCAATTTTTATCTTAAAGCTCCTAATTTTTCCAACATTTGGGCTATGTTTTCCTATACTATTTTAAATACCTTTACTCTTAAAATTAGGAGAATTTGGGGTTAATTTGAACATCATATCATTTTTTTTTTTGTTGGAAGAAAACAGTCATTTGATTAGTCGAGTGACAGGTGAAAGTGTAAAGAAAGAGCTTCAATTACTCAGTTGTAATACTG

Network for GWHGAAEX009824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	61	106	1.20E-16
PF00249.30	Myb_DNA-binding	113	155	2.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.890
SRP064423	SRR2545915	Juvenile tuber	2.160
SRP108465	SRR5643513	five period of Gastrodia elata	9.730
	SRR5643514	five period of Gastrodia elata	17.090
	SRR5643515	five period of Gastrodia elata	10.430
	SRR5643524	five period of Gastrodia elata	15.330
	SRR5643525	five period of Gastrodia elata	1.750
	SRR5643528	five period of Gastrodia elata	1.880
	SRR5643658	five period of Gastrodia elata	0.510
	SRR5643659	five period of Gastrodia elata	0.640
	SRR5643660	five period of Gastrodia elata	0.780
	SRR5643661	five period of Gastrodia elata	0.520
	SRR5643662	five period of Gastrodia elata	1.080
	SRR5643663	five period of Gastrodia elata	0.810
	SRR5643664	five period of Gastrodia elata	0.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.600
SRP279888	Gastro	Gastrodia elata tuber	0.83
	Juven	Juvenile tuber	1.39
	Mother_Gastro	Mother tuber of Gastrodia elata	21.85
	Mother_Juven	Mother tuber of Juvenile	10.75