Gene detail

Detail information of GWHGAAEX009834/evm.TU.scaffold_26.41

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695009972\|ref\|XP_009391639.1\|	5.25E-64	PREDICTED: WUSCHEL-related homeobox 11-like isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q0D3I7\|WOX11_ORYSJ	5.00E-58	WUSCHEL-related homeobox 11
trEMBL	tr\|M0SD63\|M0SD63_MUSAM	2.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P09460_001}
TAIR	AT5G17810	2.00E-49	WUSCHEL related homeobox 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	1603055	1607739	-

Transcript Sequence
>GWHTAAEX009834 CAGGCAAAATAATAGCCCTCAATCTTATTCTTTGGATGGAGGAGCAGCAGAAGAGCTCCGGCGGCTTCCCGGCCGGCGGCGAGCCTGTCCGATCGCGGTGGACCCCGAAGCCGGAGCAGATCCTGATACTGGAATCTATCTTCAACAGCGGGATGGTGAATCCTCCGAAGGAGGAGACGGTGAGGATCCGGAAGCTTCTGGAGAAGTTCGGGCCGGTCGGGGATGCGAACGTGTTCTACTGGTTTCAGAACAGGCGGTCGCGCTCGCGCCGCCGCCAGCGTCAAATTCAGGCAAGTCTTGCGGCGGCTGGTGGCGGACAGGTGGCGGTGCCGTCCTGCTCGCCGTCGAGCTCATCGGGAGGCGGGGGCGTGGGTGGATTTTACGGCGGCGCTTGGTCTGACGTCAGTATTGCGTCAGCGGAGGCGGCGCTAGTTGGGCGCCATAGGGCGGATGATCTGTTCGCTCTTTCTCAGCATATGGGCGGGGGGTTTGGAGACGAGGATTATGCGGCGGGGAAATACGTGGGCTCGTGCGACCCCGCGCAGATGCAGCAGTGCCAGTCTGGAAGCATAACTGTGTTCATCAATGGAATAGCTTCAGAGGTTCCGAGTGGACTGCTAAACATGAGGGCAGTGTTTGGGCACGATGCTCTGCTCTTCCATTCTTCCGGCGAACCCCTTCCTGTAAACGAGCACGGAATCCTTCTCCAGAGCTTGCAGATGGGAGAAAGCTATTACTTGAATATCAGAGGGCATACAAAGCATGCATGTGCGCCTCAGTCCGGAAATGATGCTGAATTTTCTCCGTTTTTATGCTCAATGACTTCGCCAGTCCCTGCTTTCTTCTTCAGAAGAAAAAATAATTGTGCAACTCTATTATGATTAGGAGAGTACCCGGAATATATGCAAATCTGTACATCGGGATTGTTCTTCTTTTGGGGGGTGGGGAATGCCAAGATCCACTGTTGGGGTAGCTTCACCTGCCGGTCTTTTTTTATTTTTATTTTTTTGTGGTATGATCTTTTTATCTTATGTTCGCATTTCTACCACACACCTTTGCTTTTTCAGGACTGACAGTATAAATTTGCCAAATTTGATCTTTTTATTTGAACGAATTGATGATAATCGTTTAGTTTCTAGAATATCAAGAATTTCAAAACCTCCATTTTGAATGTATCTAGAATTTCAAGAATTTTCTCCACAACTAGCCATAAATCCATCTTATGGCTTCGGGGGCATCCTCCTAAATAATACATATAGGAGATTTCTCCTAATTTATAAATGCAACTTGTTTTGAAGCAATCATGTCTTCTCCATTCATGACTGTCTCCTACTTTGAGACTAAGTGGACGCTTCATTATAAATTCTTATAGCTTAAGGAGTTGCGGTGTGGCTCACATTTTCTTTTGGTTTTCACATCCCAAGGCACACTACTAGATTAAAAAAAGTTCTGACA

Network for GWHGAAEX009834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	19	79	4.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-WOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.530
SRP064423	SRR2545915	Juvenile tuber	0.180
SRP108465	SRR5643513	five period of Gastrodia elata	13.920
	SRR5643514	five period of Gastrodia elata	9.130
	SRR5643515	five period of Gastrodia elata	4.240
	SRR5643524	five period of Gastrodia elata	9.890
	SRR5643525	five period of Gastrodia elata	0.720
	SRR5643528	five period of Gastrodia elata	1.380
	SRR5643658	five period of Gastrodia elata	1.600
	SRR5643659	five period of Gastrodia elata	1.020
	SRR5643660	five period of Gastrodia elata	0.200
	SRR5643661	five period of Gastrodia elata	0.410
	SRR5643662	five period of Gastrodia elata	0.710
	SRR5643663	five period of Gastrodia elata	0.150
	SRR5643664	five period of Gastrodia elata	0.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.010
SRP279888	Gastro	Gastrodia elata tuber	1.04
	Juven	Juvenile tuber	8.71
	Mother_Gastro	Mother tuber of Gastrodia elata	7.38
	Mother_Juven	Mother tuber of Juvenile	7.36