Gene detail

Detail information of GWHGAAEX009839/evm.TU.scaffold_26.52

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|567874257\|ref\|XP_006429718.1\|	1.94E-40	hypothetical protein CICLE_v10013885mg [Citrus clementina]
Swissprot	tr\|Q9FYE2\|PKS4_ARATH	2.00E-18	Protein PHYTOCHROME KINASE SUBSTRATE 4
trEMBL	tr\|V4S671\|V4S671_9ROSI	7.00E-41	Uncharacterized protein {ECO:0000313\|EMBL:ESR42958.1}
TAIR	AT5G04190	5.00E-18	phytochrome kinase substrate 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	2110853	2112989	-

Transcript Sequence
>GWHTAAEX009839 TCCATTTATAGTTTATATAGAGATCAAATTTATGCATAGCATGCTGATCAAAATAGTTTGGAAACAAGAACCAAGGATTCCAAGAATTCAAAAAACAGATTATGCCGAATGCACAGACCCAATCATTCTGCTAGCACAAAGCACCAGGAGCACAAGCGAAGACAAGCCTTACTTCTTCAAAATATTCAAGTCAAGAGTTCCCAAGTGAAATTAATCTAGCCAAATTGCCTTAGATCGCAGTCTCTCGTATGAATATATTGATTTTTAAAAAAATAGCGTAGCAAAATGACCTCTTCTCTCTTCGAATAAGCCAAACTCAATCATAAAAAATCACTGAAATCAGCTCCAAGCCTCATGCACCTATCCATATATATAGCCATTCTATTCTTCGGCCACCTCTGCTCTGCTCTGCCTCCTCTCCTCTCCTCAGTTTACTGTAATCAATAAACAAATAGATACGCATTGGATTGAAAATATAAGATGGAAAGATACAAACTCACCTCCTCAACTCTTAATGGAGTTTTCCCCCAAAAATCAGCGCATCTATTGCCAGCCTCTCCTTCTCAGATCTCACTCCCCCTAAAGCCCTATTATCTCCAAGAGCCGCACATTTTCCCCTGCCTCCGGTCCGAACCGGTCCGCATCGGCCGGTCTAGAGCCGAAGATGCGGAGATCAGCATCTTCAACGCCGAGCGCTACTTCAACGAAAACCAATTCACCAATGTAACCCCTTCCTCAACAAAGCGCAGCAGCAGCAGCACCGCAGATATCATCCCCGCATCCCAAAGCTTCAATCTTTCTCCCAAATTCCGCAGCCGGTCCTTCCGCGCCGCGCCCACCCCTTCCTCGGACGCCAGCTGGAACAGCCAGGCGGAGCTCCTCCGAAAGCCGGCTTACGGCGAGAAGAGAAAGGCGCCCTCTTCTCCTGCCGGCCGCTTTTTCTACCACATCTTTCTGTGCTTTGGCAGGAAATCCGCCGCCGTCGAGGACAACCGCTCGTCCGACTCCAAGAACTTTGCCATTGCTAAATCGGCGACCATAAAAACAGAGCAGAAGATGAGAGCTCGCACTGCCGAAATTAGCCGCCGGATTGCCGACGGATTTTCCTTTCCTTACCTGTCTCCTCGAAAGGATAACAGCGGCGAGGATCCGGTGAGAGTTTCTCTTGAAGTGTTCAGGCCACCGGAAACCCTTGCGCCGTTGACAAAAAGCCCCTTTGGCTGTGCTGTGGAGGATGACGCGGCGAGCGACACTAGTTCGGATCTTTTTGAGATCCAGTCTTTCTCGACGCAGGTGGGAGTTCGTCGGAAGGACTCATTTGACGAGCTGTCTTCGTCGTTGTTCGGCCAGAAGAAGCTTGCGGAAAGCGAGGAGGCAGCGACGCCGTCCATTGCTCCGAGCGAATGCTACCCGCCAAGCGAAGTGAGTGTGGATTGGAGCATCACCACGGCCGACGGCCTCGATCGCTCAACCGCCGCCAATTTTTCCAGTTCGGTTTCGGATTATGAGCAACTTTGTTATGCGGCAGCAGCACTCGGCGGCGGGAAGAAGAAGTTTAGCGGCTGCGGTGGCGGCAGCGGATTTTTGGGGTGCCGGTCCGAGAGGGCCGTGAGCGTTGTTGGGCCGAATGCGGCGTGGTTTGGACCGGAGTCGCAGTTCCGTTTGGGGAATGCCGTGCCATCGGTTGGGCTGGAGCGGGTTATGGCTAGCTTTCATATATCAGTCTTTTCAACTTTATATTAAAGAATTTGCTTTTGTGATGCAAATAAAGTATATTTAAGAGAGCCTCCCAATAAGTATTAAGATGCCTACAATAACTTATTTTTGTACCCATAGATAGATCAGATGCATTTGTTTGCTTGCTCATCGAGGATCGAGGGTTGAAGTAGAGGAATCATAGAGGTGCTATAATTTGATACTTCATTATTTTGAAATTGGGAGGGCTTCTCTCTCGAATTTCAAATGATCGCTAGCTTTGATCTAATATCTTCATATATTAAATCTGCTCTCCGCTCTACGATCATCCATCATATTTGCGATTTAGTATGGTGTTTACTTCATTTACTTGTATGCATTTTATTTATTTGTCGCTGTCTGGGCATATATATTTTTCATGTGCAAGAAATTGGAGTTTCCC

Network for GWHGAAEX009839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.160
SRP108465	SRR5643513	five period of Gastrodia elata	4.100
	SRR5643514	five period of Gastrodia elata	1.450
	SRR5643515	five period of Gastrodia elata	4.160
	SRR5643524	five period of Gastrodia elata	2.430
	SRR5643525	five period of Gastrodia elata	2.140
	SRR5643528	five period of Gastrodia elata	2.180
	SRR5643658	five period of Gastrodia elata	2.530
	SRR5643659	five period of Gastrodia elata	10.570
	SRR5643660	five period of Gastrodia elata	13.090
	SRR5643661	five period of Gastrodia elata	10.790
	SRR5643662	five period of Gastrodia elata	27.420
	SRR5643663	five period of Gastrodia elata	27.310
	SRR5643664	five period of Gastrodia elata	25.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.160
SRP279888	Gastro	Gastrodia elata tuber	20.04
	Juven	Juvenile tuber	0.87
	Mother_Gastro	Mother tuber of Gastrodia elata	0.48
	Mother_Juven	Mother tuber of Juvenile	0.23