Gene detail

Detail information of GWHGAAEX009846/evm.TU.scaffold_26.64

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	7.00E-29	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|695045347\|ref\|XP_009410462.1\|	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	6.00E-101	Protein TRANSPARENT TESTA 12
trEMBL	tr\|M0TJJ7\|M0TJJ7_MUSAM	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT1G33110	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	2570208	2591023	-

Transcript Sequence
>GWHTAAEX009846 ACTGAAGCAACTCAGTTGCCAGAACTGTTCCTGAGCGTAACGTTTTCGTCATTTCGAATCCGACAGCTGTCTTACTTAACTGAGAGCTGATTGAGCGCTGTACTGATTTTTGTCGTCGGTGGCTCGAGAGCGCGGGTAGCGATAGATAGCGAAAGCAAAAGAGATGGAGTGCGCGGTAAAGGAGAGGCTTCTCTCGGAAGGGGAGGGTTTAGGGTTAGGGTTACGGAAGAGGATTTGGGCGGAGAAGAAGAAGCTCTGGGTTGTAGCTGGGCCGGCCATCTTCACCCGCCTCTCTACTTTTGGGATTTCCGTCATTAGTCAAGCCTTTATCGGCCACGTTGGATCCACCGAGCTCGCTGCCTACGCCATCGTCTTCACCGTTCTCATCCGCTTCGCCAATGGCATCCTCTTCGGCATGTCAAGTGCACTCCAGACTCTCTGCGGCCAAGCCTTTGGTGCCAAGCAGAGCCACATGCTCGGCATCTACCTTCAGCGTTCATGGATCCTCCTTTTGATTTGTGCCGTCATTCTTCTCCCTCTCTTCATCTTCACCACTCCCATCCTCCGCTTTCTCATCCGAGATGAATCCATTGCAATTGTTGCCGGTTACATCTCCCTCTGGTTCATCCCTATGGTTTTCTCTTACGTTTTCTCCTTCACCCTCCAAATGTATCTGCAGTCACAGAGCAGAAACATTGTCATCTCCTACCTTGCCGCTGCCACTCTCTGCATTCATTTGTTCCTCTCTTGGATCACGGTGTCGAAGCTCTCCATGGGGGTTGCAGGGGCCATGGGCTCCATGATATTGGCGTCCTGGATTCCCATTTGTGGACAGCTTATTTTTTCAGTGTGCGGAGGATGCCCTGATACTTGGAAGGGATTCTCTAGGAGCGCTTTCAATGACTTGTGGTCTGTGCTTAGGCTTTCACTCTCCTCAGGTGTAATGATGTGTTTGGAGCTTTGGTACAACAGCATACTTCTTTTACTAACGGGAAATATGAAGGATGCTGAGACGGCCATTGATGCTCTGTCTATCTGCCTCAACATTAATGGCTGGGAAATGATGATATCACTTGGATTCATGGCGGCATCAGGGGTACGTGTTGCAAATGAGCTAGGTGCAGGCAGCGCAAAGAATGCAAAATTTGCAATTGTTGTGGCCACAAGTACATCTTTTGCAATCGGATGTTTGTTTTTCCTGTTGTTTCTTGTTTTTCGCGGAGAGGTTGCTTATGTTTTCACAGAAAGCTCAAAAGTCGCTGCTGCGGTTGCTGATCTTTCCCCTTTGCTGGCTTTCTCCTTGTTGCTGAATAGTATTCAGCCTGTGCTTTCTGGGGTTGCCTCAGGCGCTGGTTGGCAAAAATTGGTGGCCTATGTTAATGTGACATGTTACTACATAATTGGGGTGCCTCTTGGGATTGTGCTTGGATATTGGTTGGATTATCATGTTAAGGGTGTATGGATAGGAATGCTACTTGGGATTTCAGTGCAGACTTTAGCTCTGGTTTGGATCACTTGGAGAACAGATTGGGACAAACAGCATCTTGGTTGTGCAGCGATAAGATAA

Network for GWHGAAEX009846

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	37	197	5.20E-27
PF01554.17	MatE	259	419	2.90E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0015297	Molecular Function	antiporter activity
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.440
SRP064423	SRR2545915	Juvenile tuber	4.240
SRP108465	SRR5643513	five period of Gastrodia elata	28.430
	SRR5643514	five period of Gastrodia elata	16.800
	SRR5643515	five period of Gastrodia elata	22.430
	SRR5643524	five period of Gastrodia elata	26.730
	SRR5643525	five period of Gastrodia elata	8.450
	SRR5643528	five period of Gastrodia elata	9.670
	SRR5643658	five period of Gastrodia elata	11.280
	SRR5643659	five period of Gastrodia elata	7.110
	SRR5643660	five period of Gastrodia elata	5.750
	SRR5643661	five period of Gastrodia elata	5.290
	SRR5643662	five period of Gastrodia elata	1.990
	SRR5643663	five period of Gastrodia elata	5.750
	SRR5643664	five period of Gastrodia elata	2.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.600
SRP279888	Gastro	Gastrodia elata tuber	1.76
	Juven	Juvenile tuber	4.27
	Mother_Gastro	Mother tuber of Gastrodia elata	4.09
	Mother_Juven	Mother tuber of Juvenile	2.36