Detail information of GWHGAAEX009848/evm.TU.scaffold_26.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262193487|ref|YP_003264696.1|2.00E-29MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOGKOG13470Uncharacterized membrane protein, predicted efflux pump
nrgi|695045347|ref|XP_009410462.1|0PREDICTED: protein TRANSPARENT TESTA 12-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LYT3|TT12_ARATH4.00E-105Protein TRANSPARENT TESTA 12
trEMBLtr|M0TJJ7|M0TJJ7_MUSAM0MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT1G331100MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002927142992752885-
Transcript Sequence

Network for GWHGAAEX009848

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE381985.40E-27
PF01554.17MatE2614201.10E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.400
SRR2545915Juvenile tuber20.170
SRP108465SRR5643513five period of Gastrodia elata56.680
SRR5643514five period of Gastrodia elata60.240
SRR5643515five period of Gastrodia elata85.270
SRR5643524five period of Gastrodia elata77.820
SRR5643525five period of Gastrodia elata70.100
SRR5643528five period of Gastrodia elata143.300
SRR5643658five period of Gastrodia elata70.580
SRR5643659five period of Gastrodia elata13.590
SRR5643660five period of Gastrodia elata9.190
SRR5643661five period of Gastrodia elata10.630
SRR5643662five period of Gastrodia elata15.050
SRR5643663five period of Gastrodia elata9.420
SRR5643664five period of Gastrodia elata7.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.050
SRR6049655Rhizomagastrodiae_C368-T10_good_125.360
SRR6049656Rhizomagastrodiae_C368-T07_good_136.300
SRR6049657Rhizomagastrodiae_C368-T07_good_180.080
SRR6049658Rhizomagastrodiae_C368-T04_good_1114.470
SRR6049659Rhizomagastrodiae_C368-T04_good_1174.310
SRR6049660Rhizomagastrodiae_C368-T01_good_172.480
SRR6049661Rhizomagastrodiae_C368-T04_good_1108.500
SRR6049662Rhizomagastrodiae_C368-T01_good_156.310
SRR6049663Rhizomagastrodiae_C368-T01_good_170.790
SRR6049664Rhizomagastrodiae_C368-T10_good_124.230
SRR6049665Rhizomagastrodiae_C368-T10_good_124.230
SRP279888GastroGastrodia elata tuber 8.34
JuvenJuvenile tuber114.98
Mother_GastroMother tuber of Gastrodia elata 329.19
Mother_JuvenMother tuber of Juvenile 322.71