Detail information of GWHGAAEX009851/evm.TU.scaffold_26.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1041 | 0 | Translation initiation factor 2C (eIF-2C) and related proteins |
| nr | gi|672170566|ref|XP_008805343.1| | 0 | PREDICTED: protein argonaute 4B-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q0JF58|AGO4B_ORYSJ | 0 | Protein argonaute 4B |
| trEMBL | tr|I1PIX5|I1PIX5_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA04G0014400.1} |
| TAIR | AT2G27040 | 0 | Argonaute family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 2966678 | 2978910 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009851
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16486.4 | ArgoN | 58 | 216 | 4.00E-31 |
| PF08699.9 | ArgoL1 | 228 | 276 | 7.30E-17 |
| PF02170.21 | PAZ | 282 | 407 | 6.00E-22 |
| PF16488.4 | ArgoL2 | 417 | 462 | 1.30E-14 |
| PF16487.4 | ArgoMid | 471 | 523 | 1.00E-06 |
| PF02171.16 | Piwi | 561 | 868 | 6.60E-101 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11593 | ELF2C, AGO | Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 114.350 |
| SRR2545915 | Juvenile tuber | 105.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 99.530 |
| SRR5643514 | five period of Gastrodia elata | 106.090 | |
| SRR5643515 | five period of Gastrodia elata | 93.010 | |
| SRR5643524 | five period of Gastrodia elata | 99.760 | |
| SRR5643525 | five period of Gastrodia elata | 76.670 | |
| SRR5643528 | five period of Gastrodia elata | 64.160 | |
| SRR5643658 | five period of Gastrodia elata | 63.360 | |
| SRR5643659 | five period of Gastrodia elata | 107.070 | |
| SRR5643660 | five period of Gastrodia elata | 113.900 | |
| SRR5643661 | five period of Gastrodia elata | 110.070 | |
| SRR5643662 | five period of Gastrodia elata | 125.570 | |
| SRR5643663 | five period of Gastrodia elata | 114.390 | |
| SRR5643664 | five period of Gastrodia elata | 127.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 110.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 120.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 103.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 118.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 107.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 109.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 105.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 109.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 108.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 97.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 99.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 99.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 130.43 |
| Juven | Juvenile tuber | 158.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 85.69 | |
| Mother_Juven | Mother tuber of Juvenile | 157.90 |