Detail information of GWHGAAEX009862/evm.TU.scaffold_26.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2460 | 0 | Signal recognition particle, subunit Srp68 |
| nr | gi|695056335|ref|XP_009416385.1| | 0 | PREDICTED: signal recognition particle subunit SRP68 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0TXN3|M0TXN3_MUSAM | 0 | Signal recognition particle subunit SRP68 {ECO:0000256|PIRNR:PIRNR038995} |
| TAIR | AT5G61970 | 0 | signal recognition particle-related / SRP-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 3222447 | 3245974 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009862
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16969.4 | SRP68 | 41 | 573 | 1.70E-155 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03107 | SRP68 | Protein export | map03060 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006614 | Biological Process | SRP-dependent cotranslational protein targeting to membrane |
| GO:0005047 | Molecular Function | signal recognition particle binding |
| GO:0008312 | Molecular Function | 7S RNA binding |
| GO:0030942 | Molecular Function | endoplasmic reticulum signal peptide binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005786 | Cellular Component | signal recognition particle, endoplasmic reticulum targeting |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.000 |
| SRR2545915 | Juvenile tuber | 33.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.740 |
| SRR5643514 | five period of Gastrodia elata | 26.600 | |
| SRR5643515 | five period of Gastrodia elata | 25.330 | |
| SRR5643524 | five period of Gastrodia elata | 26.080 | |
| SRR5643525 | five period of Gastrodia elata | 24.430 | |
| SRR5643528 | five period of Gastrodia elata | 28.090 | |
| SRR5643658 | five period of Gastrodia elata | 32.030 | |
| SRR5643659 | five period of Gastrodia elata | 24.490 | |
| SRR5643660 | five period of Gastrodia elata | 25.600 | |
| SRR5643661 | five period of Gastrodia elata | 24.180 | |
| SRR5643662 | five period of Gastrodia elata | 23.630 | |
| SRR5643663 | five period of Gastrodia elata | 23.150 | |
| SRR5643664 | five period of Gastrodia elata | 20.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.46 |
| Juven | Juvenile tuber | 37.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.05 | |
| Mother_Juven | Mother tuber of Juvenile | 28.81 |