Gene detail

Detail information of GWHGAAEX009866/evm.TU.scaffold_26.91_evm.TU.scaffold_26.92

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2218	8.00E-145	ER to golgi transport protein/RAD50-interacting protein 1
nr	gi\|743879949\|ref\|XP_010908521.1\|	0	PREDICTED: RINT1-like protein MAG2L isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8GXP1\|MAG2L_ARATH	5.00E-148	RINT1-like protein MAG2L {ECO:0000305}
trEMBL	tr\|M0SD55\|M0SD55_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P09380_001}
TAIR	AT1G08400	8.00E-145	RINT-1 / TIP-1 family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	3490398	3512443	-

Transcript Sequence
>GWHTAAEX009866 TTCACTGAGTCACTCGGTACTCTCTTACTGTTGTACAGCATGCCTTAGTAGAAGAGATTTTTTCCCTGAAGATGACGGGGACTCCAGCCGTGCTTCCGGGCACTGGTGGCGTTCCGCTCTGGCTCCTAGGGTTTTTGCAAGATCACTTTCGAGAACCTGAGGATCTCTCCTCCATCCAATTTCTCACAGCTCGGCTAAAGCAAGAGTTGAAGGATTGCGAAGTGAAGCTCCTCAACCTAAACAGAAGATTCTCTCTTTCCATATCTTCATGGATATCCCATTCCAGCAACGTGGGGAGGATTCTAAGCGGGATTGAAATCGTCCCTCTCTGTTCATTTCGAGATGGCAGATCGCTTAGTAAAAATTTGCTTGTGGACTTAGCTTTACTCTCTAAAGGGGTTGGTAGCATCCAGTCAGTCAGGCTTTATGCGGAGACTGTGCTTCGTCTGGAAACCTTAGTTGGTAACCTTGAAGATGCCACTTTGTCAATGGTGAATCATGTTTCTAGGAAGAAGTTTGAAAATATTTTTTCCAAAGAATTATCAAATCAGACTGCAACTCAGATTGAGAGTGAATGGCACCTAACAAAATTGCTTATTGCAGTAGCAGTCATGAAAGATATAGAAGAAGTTCTAACTCACGTTGCAAACAACAGGCCTCTGTGGATAAATTTGCTCATTTCTGTTGATTCCCGAGTGGAGAAATCGTTAGCTATTTTGAGATCACAATGTCTAAGTGATTACAGACTTCTAATTGCGTCTCTTGGTTGGCCGCCATCTTTTTCATCAACTATTGTGGATAAAGATGATTGCATGGCACTGTTGAATTCATTATTTTCTATCCAGGGGGTAATGAAAGCCAGATTTTCTCAGAGCTTCGTGGCATTATGTTCCCTGCAGCAGCTACAAATGAAACGTGAAGCGCGCTTGACTTGTATGCAGAGAAATCGAACAAATAGTAATAAGGATTTCAAAGGTGTGCCTGAAGTGCCATTCTTTAGATATGGGCTTTGGCCAATTGATGAACTGGTGAACCCTCTCACCGTACGGATGGAATACCATTTTTCCAAATGGTTAGATCAGCCAAAGTTCATCTTTGCACTTGTCTACAAAATGATCCAAAATTTTTTGGATGGTGTTGAGAACGCTTTTCAGCCTTTGATTGATAATGCCAGGTTTTCGGGGTGTAGTGCTAAGGAAGCTTGGGTAATAGCAATGGTGAGGATGCTTTTGAAGTATTTAGAAAGACAGGTTTTTTCTGCCCTTATAAAGCACCACCACAGCATGGACACCGACTCGGAGATCACGTCTTCATTTCTTAATATGGTTGATCTCATGATTTCTTTTGATAAGAGGATGAGTGTTCTCTCTTCTCCAGGAACTCATTCTACTGTTTCATTTGCTTCTATTTCGGAGCTTGCTCCTACTTTTTCAATAATGTCCATATTCAATGAGCATTCTGATTGGCTACAGCTGTGGGCAAAAATAGAGGTGAAAGATGCTGAAAGAAGGCTAAAACCTCTGCTGGAGGATGAGAGAAGCTGGTTTGAAGCCTTGGTTGATCAAGATGGACACACCTCTGACAAAGAAGATTCCTTCCTACTTTTAACTAGAGAAGATTTTAAGGCTCCCTTAATCACAGATTCTGTTTTCAACTCAGCATGGGCAATGATAGAGAGAGGCTTAGCCTTACCTTGCATCAGGAGTAGAAATCAATTCATCATCTCTTCCGCAAATTTGTTTTTGAGCCATTTCTTCATCACCTTGCTTCAGCACAGCAGAGACGTGGAATTCATGGATGCTATTTTGGATAACGCCCAATTATTGAGAATTTGCAGAGCCGTAAATACTGCCAGATACTCCGAACATGTTCTGCGTGAGTGGAGCGAGGATGTGAATTTGATGGAAATGCGTGCATCTGAGCACCATCCACATAATTCATTGTTTGAGGATGGAATAATGTTCTTGGTGAAGCTGCATACAGATTGTCTCGAGGAGATTGTGACTGCTTTTCTTGTTCACTTTGATGCTTTATGCTCGAACTATGTTCGAGCTAGTGACCAATGGAAGAAAATAAAGCAAGTCGACTCGGATTTTGGCATCCAGCGGGATGAACCTTATCTGTCCATATCTCCTAGTTTGGTAGAAGCTTTGGACATGTTGAGAGATCGACTCCAGTTCTTAAAGCTGAACCTTAACCAACTGGACTTTCTAGATTTCTGGAGAAGCATTGCAGGAGGGCTTGATCATTTCTTTTTTGCTAGTATCCCAATGAGGGATGCAGGTTTCTCTTCCCTGGGGGCCTATCAGTTCAACACTGATATGAAGGCTCTTTTCTTTATATTCAATTCATTTTGCTCCAGGCCCGAAGCATTTTTTCCGTGCACCAGCAGTTCTTTGAAATTGCTGAAAAATTGTGAGGATGATTAGATCAGCTGCTTAAGCTTTTGTCACAGGGGCCATGTTCGGCTGCATCAGAAGATTGCCTGCAACTTGGAGGATGATTTCATTTATCTCCAATTCAGGCTGAAAAGGTGCTAAGGAACTGAATGTTAGATCATGTGAGCCCTATGTAGCCATTCTGTTCTTTGATTAATTTTTTGTTTTCATACTTGTAGCACACAATGCATCTTCTTAAACTCAAGATGATTAGGTAATTTAATCTACCAATATGAAGTTATTTATAGCATGAATTCAGAAAAGTTGAAAAATAACCAATAGAGAATTACAGGTGGCAACCGCTGTATAAGATAAAGGGTTGCTGTACCAAAAGCGTAGTACCTATGGTCTGAAATAAATAATTGATTCTTTTGTAGTTATTTTCAAGGCTATGCTTTTTCGTATAGTTACAGATCCCCTGTAATTACTTTATGCCTTCAGAAAAGAAGCTATGGCTGACTTGGCACAACTAATGAGGTTGAGTTAGTACTGTTTCAAT

Network for GWHGAAEX009866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04437.12	RINT1_TIP1	314	780	4.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048193	Biological Process	Golgi vesicle transport
GO:0005783	Cellular Component	endoplasmic reticulum

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.160
SRP064423	SRR2545915	Juvenile tuber	4.180
SRP108465	SRR5643513	five period of Gastrodia elata	2.500
	SRR5643514	five period of Gastrodia elata	2.860
	SRR5643515	five period of Gastrodia elata	2.980
	SRR5643524	five period of Gastrodia elata	2.700
	SRR5643525	five period of Gastrodia elata	7.900
	SRR5643528	five period of Gastrodia elata	5.040
	SRR5643658	five period of Gastrodia elata	9.120
	SRR5643659	five period of Gastrodia elata	4.040
	SRR5643660	five period of Gastrodia elata	4.780
	SRR5643661	five period of Gastrodia elata	4.310
	SRR5643662	five period of Gastrodia elata	4.580
	SRR5643663	five period of Gastrodia elata	5.440
	SRR5643664	five period of Gastrodia elata	4.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.260
SRP279888	Gastro	Gastrodia elata tuber	3.44
	Juven	Juvenile tuber	3.60
	Mother_Gastro	Mother tuber of Gastrodia elata	2.47
	Mother_Juven	Mother tuber of Juvenile	2.53