Detail information of GWHGAAEX009877/evm.TU.scaffold_26.117


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|352681240|ref|YP_004891764.1|6.00E-09RNA-binding protein of the translin family [Thermoproteus tenax Kra 1]
KOGKOG30663.00E-121Translin-associated protein X
nrgi|743883059|ref|XP_010909314.1|4.10E-154PREDICTED: translin-associated protein X isoform X1 [Elaeis guineensis]
trEMBLtr|M0SD48|M0SD48_MUSAM1.00E-143Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P09310_001}
TAIRAT2G037803.00E-121Translin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002944650764481559-
Transcript Sequence

Network for GWHGAAEX009877

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01997.15Translin482462.60E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0043565Molecular Functionsequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms130.000
SRR2545915Juvenile tuber82.600
SRP108465SRR5643513five period of Gastrodia elata40.050
SRR5643514five period of Gastrodia elata32.730
SRR5643515five period of Gastrodia elata28.770
SRR5643524five period of Gastrodia elata27.620
SRR5643525five period of Gastrodia elata33.930
SRR5643528five period of Gastrodia elata26.270
SRR5643658five period of Gastrodia elata39.280
SRR5643659five period of Gastrodia elata41.720
SRR5643660five period of Gastrodia elata39.370
SRR5643661five period of Gastrodia elata43.460
SRR5643662five period of Gastrodia elata36.550
SRR5643663five period of Gastrodia elata47.100
SRR5643664five period of Gastrodia elata44.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.300
SRR6049655Rhizomagastrodiae_C368-T10_good_146.790
SRR6049656Rhizomagastrodiae_C368-T07_good_138.210
SRR6049657Rhizomagastrodiae_C368-T07_good_168.890
SRR6049658Rhizomagastrodiae_C368-T04_good_163.890
SRR6049659Rhizomagastrodiae_C368-T04_good_172.520
SRR6049660Rhizomagastrodiae_C368-T01_good_152.020
SRR6049661Rhizomagastrodiae_C368-T04_good_148.260
SRR6049662Rhizomagastrodiae_C368-T01_good_131.210
SRR6049663Rhizomagastrodiae_C368-T01_good_137.180
SRR6049664Rhizomagastrodiae_C368-T10_good_134.880
SRR6049665Rhizomagastrodiae_C368-T10_good_134.880
SRP279888GastroGastrodia elata tuber 45.26
JuvenJuvenile tuber38.96
Mother_GastroMother tuber of Gastrodia elata 18.72
Mother_JuvenMother tuber of Juvenile 21.71