Detail information of GWHGAAEX009879/evm.TU.scaffold_26.121_evm.TU.scaffold_26.122
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336178956|ref|YP_004584331.1| | 1.00E-89 | UDP-N-acetylmuramate--L-alanine ligase [Frankia symbiont of Datisca glomerata] |
| nr | gi|672163882|ref|XP_008801801.1| | 0 | PREDICTED: uncharacterized protein LOC103715820 [Phoenix dactylifera] |
| trEMBL | tr|F6H6C9|F6H6C9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47840.1} |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 4521008 | 4549128 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009879
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01225.24 | Mur_ligase | 77 | 180 | 9.10E-20 |
| PF08245.11 | Mur_ligase_M | 185 | 294 | 3.00E-12 |
| PF08245.11 | Mur_ligase_M | 323 | 384 | 1.30E-05 |
| PF02875.20 | Mur_ligase_C | 414 | 494 | 6.70E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0008763 | Molecular Function | UDP-N-acetylmuramate-L-alanine ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.340 |
| SRR2545915 | Juvenile tuber | 4.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.720 |
| SRR5643514 | five period of Gastrodia elata | 4.120 | |
| SRR5643515 | five period of Gastrodia elata | 2.790 | |
| SRR5643524 | five period of Gastrodia elata | 4.520 | |
| SRR5643525 | five period of Gastrodia elata | 1.540 | |
| SRR5643528 | five period of Gastrodia elata | 2.670 | |
| SRR5643658 | five period of Gastrodia elata | 1.570 | |
| SRR5643659 | five period of Gastrodia elata | 1.070 | |
| SRR5643660 | five period of Gastrodia elata | 0.990 | |
| SRR5643661 | five period of Gastrodia elata | 1.600 | |
| SRR5643662 | five period of Gastrodia elata | 0.680 | |
| SRR5643663 | five period of Gastrodia elata | 0.520 | |
| SRR5643664 | five period of Gastrodia elata | 0.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.71 |
| Juven | Juvenile tuber | 2.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.99 | |
| Mother_Juven | Mother tuber of Juvenile | 1.53 |