Detail information of GWHGAAEX009882/evm.TU.scaffold_26.125


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158337618|ref|YP_001518793.1|0DNA gyrase subunit B [Acaryochloris marina MBIC11017]
KOGKOG03550DNA topoisomerase type II
nrgi|672161826|ref|XP_008800743.1|0PREDICTED: LOW QUALITY PROTEIN: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q5YLB4|GYRB_NICBE0DNA gyrase subunit B, chloroplastic/mitochondrial (Precursor)
trEMBLtr|A0A067JZH2|A0A067JZH2_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP29252.1}
TAIRAT5G041300DNA GYRASE B2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002945814514636635+
Transcript Sequence

Network for GWHGAAEX009882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02518.25HATPase_c1132591.60E-20
PF00204.24DNA_gyraseB3104791.70E-53
PF01751.21Toprim5086094.80E-18
PF00986.20DNA_gyraseB_C6527133.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006265Biological ProcessDNA topological change
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005694Cellular Componentchromosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.610
SRR2545915Juvenile tuber15.040
SRP108465SRR5643513five period of Gastrodia elata22.240
SRR5643514five period of Gastrodia elata29.760
SRR5643515five period of Gastrodia elata23.540
SRR5643524five period of Gastrodia elata27.980
SRR5643525five period of Gastrodia elata5.650
SRR5643528five period of Gastrodia elata3.810
SRR5643658five period of Gastrodia elata4.710
SRR5643659five period of Gastrodia elata15.250
SRR5643660five period of Gastrodia elata14.060
SRR5643661five period of Gastrodia elata15.710
SRR5643662five period of Gastrodia elata8.760
SRR5643663five period of Gastrodia elata9.350
SRR5643664five period of Gastrodia elata9.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.030
SRR6049655Rhizomagastrodiae_C368-T10_good_115.810
SRR6049656Rhizomagastrodiae_C368-T07_good_122.710
SRR6049657Rhizomagastrodiae_C368-T07_good_116.870
SRR6049658Rhizomagastrodiae_C368-T04_good_113.350
SRR6049659Rhizomagastrodiae_C368-T04_good_111.050
SRR6049660Rhizomagastrodiae_C368-T01_good_119.730
SRR6049661Rhizomagastrodiae_C368-T04_good_117.920
SRR6049662Rhizomagastrodiae_C368-T01_good_130.680
SRR6049663Rhizomagastrodiae_C368-T01_good_121.740
SRR6049664Rhizomagastrodiae_C368-T10_good_126.910
SRR6049665Rhizomagastrodiae_C368-T10_good_126.910
SRP279888GastroGastrodia elata tuber 14.88
JuvenJuvenile tuber24.02
Mother_GastroMother tuber of Gastrodia elata 9.03
Mother_JuvenMother tuber of Juvenile 16.96