Gene detail

Detail information of GWHGAAEX009893/evm.TU.scaffold_26.139

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672157352\|ref\|XP_008798380.1\|	1.28E-179	PREDICTED: F-box protein At2g32560-like [Phoenix dactylifera]
Swissprot	tr\|Q8RY82\|FB121_ARATH	3.00E-139	F-box protein At2g32560
trEMBL	tr\|M0SFQ8\|M0SFQ8_MUSAM	5.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P18420_001}
TAIR	AT2G26850	1.00E-113	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	5229675	5236225	-

Transcript Sequence
>GWHTAAEX009893 GTCACAGTAAAATAGTATTTCTTTGTAAAATTATAATTTATTAAAAAGATTTGAAGGATAGAGCAAGATGCCATTTCCTAGTAGGTACTCGGTCGGTGTAAACGCAAATGGAAACGAGCAAGTTCTGCCTTCCCATTTAGCCCAACTATATATACTTAGGTTTTGGAGTTTCTGATAGCTGTTCCTCAGAGCTCTTTCTCAGGTAGTAGTTCTTTATCAGTGTTTTTTCATTCTTTCCTCTTCTGCCTCTTCTGCCTCTTCTGCCTCTTCTGCTTTCCCCCCTCCAAGATCCTTCTTTTATCTCCAGATATCCGGATCAAAATCCCACCTTTTTTCTCCCCAGGTTTGATGCGAGAGAAATAATCTATGTTCCTTATCCACTGGTGCCTTGTCCCTATTACTCGGAGAACCTTTTTCCTTCTTTAATCCCCTCTTTTTAAGTGGGTTTCACTTTCGGCATACATGAAGATAAACTTATTTGATAAAAAGGGATTTAAATAGATCTCATATACCTTCCCTTTAAAGAAAAAGGACCCTTTTTAATATTAATTTATATGTGGATCACAAATCGGCCGGTCGACAATCTCCAACTCTTTTTCTTTACTGATGCTTTTCTTACTCCTTTTATCTGTCTTCTCCTTCTCCCTCCTCTTCCCAAATCCGCTTCTTCCCTTGAAAGAGAGTAGGCTGCTTTCCATGGTTGCAAAAAAGTACGCTTCCCGCATAGAAAGCAGGGAGGATTCCACGGAGATGTCTGTTCTGGACTTGCCCGAGCTGGCTCTGGAGTGTATTTTGGGGAGGCTTTCGCCTGCCGGTCTCTGTAACATGGCTGGAGTCTGCAGATCTATGAGGGAAAGATGCAGGAGTGATTACTTGTGGGAAAGACATATGAGGGAGAAATGGGGGCGACTGATCGGCCCTTCCACCCATAGAAATTGGCGCAAATATTTGAATGAGTCGACGGCCTTCGCCGCTGTTGGGAAGCACAAGAGGTTGCTCGGATCGCTCTCACGCCTTTGCCCACTCTCATGGCTTAATCTGAGGCTGAGGTTTAGTAGAAGCTCTTTGCCTGAGGACTCCATCATGTCCTGGTATTTGTCTCTTGAGAGTGGCAGATTCTGGTTTCCTGCTCAAATTTACAACAGGGAGCATGGAAATATTGGCTTTATGTTGTCATGTTATGATGCGGAGCTAAGTTATGACTGCAGAACCGACACATTCCATGCGAGCTATCCACCCCATGGACGCCGAACCAGTGTGATAGAGGAGGGAGTGCAGTGGGAGAGAATAAGGGCGCCACCTATTGATGCTCCTGCACATGATCTCCACATATCTGATTGCCTTCATGATCTTCATCCTGGGGATCATATTGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCGTATGGCTGGTGGTATGGGATGGTAGGCCATCAGGAGGCTTGCGATGGAAACGAGAATTTTTGTCGCTGCCATAGTTCTGACACTGTTATCTTAAAGTTTAACCAATACACTCCTGGTTCGAGATGGGGGCAAGCAACGATAAACAGGAAGGATCATCGTGAAGAAGGGAACGAAACCGATGGGTTTTACGGAGGAATCCGAAAGCTCTATTCCAATGATGAAATTTCTACATGGTTGCAGCTATGGCCAGCAGACATATTGGAGTAGCCCTCTTTAGTCTCTTATGCTTCATCCTGTCCCCAATTTCTCAGCATCCATAAGACTAGATTATATTCTGGAGTTGTAAATGTGATTTGTATGATGCTTATGTCTATTTTGCCACTTGTAGTGCCTTAATTCCTCTTCAAAAATTCAAATTGTAGTTTTGTAAGAATTTAGATTGTAAAATACATTCATGAACTTATTTAACTCATTTGTTGCTGCAATTCATTGCCATTTGCCGCTGATCATGCCATGCACATTTTTATACTGGATAAAGTATATCGTTCAATGCT

Network for GWHGAAEX009893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	49	95	5.90E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.300
SRP064423	SRR2545915	Juvenile tuber	22.410
SRP108465	SRR5643513	five period of Gastrodia elata	34.450
	SRR5643514	five period of Gastrodia elata	37.810
	SRR5643515	five period of Gastrodia elata	39.570
	SRR5643524	five period of Gastrodia elata	37.390
	SRR5643525	five period of Gastrodia elata	89.560
	SRR5643528	five period of Gastrodia elata	38.770
	SRR5643658	five period of Gastrodia elata	92.580
	SRR5643659	five period of Gastrodia elata	36.100
	SRR5643660	five period of Gastrodia elata	35.030
	SRR5643661	five period of Gastrodia elata	33.460
	SRR5643662	five period of Gastrodia elata	31.620
	SRR5643663	five period of Gastrodia elata	34.380
	SRR5643664	five period of Gastrodia elata	36.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.110
SRP279888	Gastro	Gastrodia elata tuber	21.85
	Juven	Juvenile tuber	24.95
	Mother_Gastro	Mother tuber of Gastrodia elata	21.70
	Mother_Juven	Mother tuber of Juvenile	23.07