Gene detail

Detail information of GWHGAAEX009894/evm.TU.scaffold_26.142

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2058	Ypt/Rab GTPase activating protein
nr	gi\|672130935\|ref\|XP_008789018.1\|	PREDICTED: TBC1 domain family member 8B-like isoform X2 [Phoenix dactylifera]
trEMBL	tr\|A0A059AD31\|A0A059AD31_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW51654.1}
TAIR	AT3G55020	Ypt/Rab-GAP domain of gyp1p superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	5339876	5429590	+

Transcript Sequence
>GWHTAAEX009894 TTAATGGGCGGGGTTTTGGAAAAACCGCCGCTATAACCGTTCGATGACAAATCTGCCGTGATTTTTCCTTCCTATTCCCAATCGTTCCCCATTCTTAGCTGATATTTTACGCATGCGAGCTTCAATCCTCGCTCGGCGCATGGAGCGAAGGCGTTCGGTACTGCAAGTGACCATTCCCAATTATTGTAACCAACTGGGGCAGAAATTGAGGCACCATTCTCTCATCCGTCGCAAAAACCGAGGGCTGGCAAAAACTGGGGGCTGCAGCAGTGTTTTCCGCAACACCGAAAGAATGAAAGTTAGGATAATCACCCTTATATTGTTACTGTGAAGTTTAAGTGGCGAGCGACAACGGGTTATCCCTTCCGAGTTAATCGCCTTTTCGAGAGGCTTATTTTCTCTTCGGCATCATCATTTCCTGTATCTGTTTCGTTTCTCATTTCATGTTACTTGGCATCGTCGCTCGTTAAGTTCATTACTGCGTGCTATCGTCTTCCCTCGTTCTTGATCTGAGCTTAAGTAGGTATTCATGAGTTGATCAGTGGATAAAAGACGCTTTTTTAACGGATTTTGCCTTAGGTTCTGCCGTGAAATCTAGGGTTTTGGGTTTGTCGTGAATGCATTTTGAGAATGTGACCGACGAGGAACCTAACGTGCCTTAATTAGATTTGGGTCTCTCATGGAGGTAGAGTTCAGGGATGCACATGGGTTTGCAGTGCCTCCACAATACTTGCAAAAATATGGTGAATTTGCTAGAATCTACAAGGAGGAAGAGAAAGATAGGTCACAGAGATGGAAAGTCTTTTTAGAAAAGTTGGCTGAACCTAAAGTAAATTTGAGAGAGGAAAGTGGCTTCACAGCACCTGAAATTGTTTCGGGAGGAGATGGTCATTCAGCTAATGTTGGAAAGACCGGTGATTTAGAAAAAAGGCTTACAACAGGGGATGATATACAGGAGAATCTTAGCAAAGATGATGATGGCTCTGAAGAAATTTTGAAAAGATGGAATGAGGTTGAAAATGATGAAAGCTTACAAGAGCGTATTCTCATAAAGGAAAGCGACCAGACCATGCTCAGCATTTTCCAGGATTCGGCAACATTACTTAGTGCATCAGAGCCAACCATACCATGCCTGAGACATTGTAAAGATTTTATATGGGCCGACATTAGTCCTTCCCTAAGTGGTATTGAGCAAATAATGAGCTATAGAGTGAAGAGAAAGGCTCTATTGGACACTCAACAAAGTATTGAGAGCAGCAACTGTCTCAATCCTATGGATGAGGCAACTCCTATGAAAGGATTTTTAGGAGAATATTCTGTAGAAAAAACAGATTGGGTAGACATAGTTAAAGGTGTACCTCCCAACTATGATGAAACTGCTAACATGGCAATCAATCACACTTCCAAGGAGTCTAGATTTCCTTTGAAAGAAGTAGAGTGCCTGGTTCGGGATGGGGTGCCAATGCGCCTTAGAGGAGAGCTTTGGCAAGCTTTTGTTGGTGTTCGAGCACGAAAGGTGGATGGATACTATCAAAAGCTTTTAAATCTAGAAGTGAGTTGTGGAGGCCTGATTAGTTCTGAAGCTCAGAAATGGAAAGGGCAGATTGAGAAGGATTTACCTAGAACATTTCCAGGGCATCCGGCTTTGGATGAGGATGGAAGAAATGCTTTGAGGCGCTTACTGACTGCATATGCTCAGCATAATCCATCAGTTGGCTATTGTCAGGCTATGAATTTCTTTGCTGGCTTGTTACTTATGCTGATGCCTGAGGAAAATGCATTCTGGACTTTATTGGGAATTATTGATGATTATTTTGAAGGATACTACACTGAGGAAATGATTGAGGCTCAGGTAGATCAGCTTGTTTTAGAGGGTATAATTCGTGAAAGATTCCCTAAATTAGTTCATCACTTAGACTTCCTGGGGGTGCAAGTGGCTTGGATCACCGGACCTTGGTTCCTCTCAATTTTTTTGAATATGGTTCCATGGGAAACTGCTCTCCGAGTTTGGGATGCGCTTCTTTTTTATGGAAACCGTGTGATGCTGTTTCATACAGCACTTGCATTGCTGGAGTTGCACAGTTCTGAATTGGTAGCTGTAAAGGATGCAGGAGATGCAGTAACGTTACTTCAATCACTAGCTGGCTCAACGTTTGATAGTAGTCATCTTGTCTTGACAGCTTGCATGGGTTATCAAACTGTTAATGAAGTAAAATTACAGGAGCTTAGGAAAAAATATAGGGCTGATGTTGTCAAAGATATGGCAGAACGGTCAAGAGGTCCCAAACATTCCATAAGTTTAGCTACTCAGCTTTATAGCTTTAAACGTGATCCTGATGCCCTGCTTCTTGGAGCGAAACTGACAGAAGCATCCCATGATCGACATATAGATGAGAGCAAGACTTCAAAATTGAAGTTATTCAGTAATGGTGATGCTGATTCGGATCTCACTGAACAGGTGACTAGGCTGAAGGTTAAGCTGTGCAGGTTATTGAGTGAGCAAAGATCTGCAAATATCAGAGCAGAGGAACTGGAAACAGCTTTTATGGAGATGGTTAAGCAGGACAATAGACGTATTTTGATTGCAATGGTTGAGCATCTGGAGAAAGAGGAGTGTGAGTTGAAATTGGCTCTTACGAGCAAACAGGAACAAGAACATGACATGATTAAGGCCTTGGTGAATTTAGAACAAGAACAGAAGGTTGTTGAAGATGCACGATTATCTGCTGAACAAGCTGCTGCAGCTCAAAAATATGCAGCTAGCATTTTAAAGGAAAAGTATGAAGCAGCAATGGTAGATCTTGCGGAGAAGGAGAAACATGCTTTAATGGCAGAAACCTTGTTGGAGGCTACAGTGCAATACCAGTCAGGTCAAGTGAAAGCCCAGCTAAAAACACCTCAACCCCCACGAACTTGGAAGATTAGTGAAGATTCTGTTGTCCAAAGAGGCTTGCTTTCTAGACCATATGGATGGTTTGACAAAAATAAGGGTAAACCAAACGATGCAGAGAAGCCCAACGAGCCCGAATAACCCAATACTAGAGAGGATGTCGGTGCAACCATGTTTAATTTTTTCCATTTTAATTATTTGATAATTATTTTGTTTTTCAGGCTAATAAAATTTTCCAATTTACTAAAATTTTAATTGATGTTTCAATTATTTTTGTATATAACATATTGTTATTTTTTCACATATTTCATGTATGGTATTTCTGTTTTTAATGACTGA

Network for GWHGAAEX009894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00566.17	RabGAP-TBC	263	471	6.00E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.400
SRP064423	SRR2545915	Juvenile tuber	3.210
SRP108465	SRR5643513	five period of Gastrodia elata	3.070
	SRR5643514	five period of Gastrodia elata	2.790
	SRR5643515	five period of Gastrodia elata	3.370
	SRR5643524	five period of Gastrodia elata	2.380
	SRR5643525	five period of Gastrodia elata	2.590
	SRR5643528	five period of Gastrodia elata	1.830
	SRR5643658	five period of Gastrodia elata	1.610
	SRR5643659	five period of Gastrodia elata	1.850
	SRR5643660	five period of Gastrodia elata	1.760
	SRR5643661	five period of Gastrodia elata	2.470
	SRR5643662	five period of Gastrodia elata	2.750
	SRR5643663	five period of Gastrodia elata	3.240
	SRR5643664	five period of Gastrodia elata	1.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.860
SRP279888	Gastro	Gastrodia elata tuber	5.74
	Juven	Juvenile tuber	10.34
	Mother_Gastro	Mother tuber of Gastrodia elata	4.46
	Mother_Juven	Mother tuber of Juvenile	5.95