Detail information of GWHGAAEX009895/evm.TU.scaffold_26.143


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17632.00E-159Uncharacterized conserved protein, contains CCCH-type Zn-finger
nrgi|586646899|ref|XP_006828300.1|0hypothetical protein AMTR_s00023p00231760 [Amborella trichopoda]
Swissprottr|Q0JHZ2|C3H11_ORYSJ6.00E-167Zinc finger CCCH domain-containing protein 11
trEMBLtr|W1NJV2|W1NJV2_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERM95716.1}
TAIRAT2G202802.00E-159Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002954302495464009-
Transcript Sequence

Network for GWHGAAEX009895

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16543.4DFRP_C2173032.60E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.810
SRR2545915Juvenile tuber65.240
SRP108465SRR5643513five period of Gastrodia elata60.430
SRR5643514five period of Gastrodia elata56.720
SRR5643515five period of Gastrodia elata57.310
SRR5643524five period of Gastrodia elata55.280
SRR5643525five period of Gastrodia elata59.900
SRR5643528five period of Gastrodia elata82.360
SRR5643658five period of Gastrodia elata60.210
SRR5643659five period of Gastrodia elata63.380
SRR5643660five period of Gastrodia elata64.530
SRR5643661five period of Gastrodia elata67.860
SRR5643662five period of Gastrodia elata58.140
SRR5643663five period of Gastrodia elata58.180
SRR5643664five period of Gastrodia elata53.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_144.190
SRR6049655Rhizomagastrodiae_C368-T10_good_158.030
SRR6049656Rhizomagastrodiae_C368-T07_good_151.680
SRR6049657Rhizomagastrodiae_C368-T07_good_143.210
SRR6049658Rhizomagastrodiae_C368-T04_good_141.300
SRR6049659Rhizomagastrodiae_C368-T04_good_143.960
SRR6049660Rhizomagastrodiae_C368-T01_good_139.660
SRR6049661Rhizomagastrodiae_C368-T04_good_143.540
SRR6049662Rhizomagastrodiae_C368-T01_good_152.880
SRR6049663Rhizomagastrodiae_C368-T01_good_148.670
SRR6049664Rhizomagastrodiae_C368-T10_good_165.170
SRR6049665Rhizomagastrodiae_C368-T10_good_165.170
SRP279888GastroGastrodia elata tuber 50.44
JuvenJuvenile tuber47.68
Mother_GastroMother tuber of Gastrodia elata 63.92
Mother_JuvenMother tuber of Juvenile 71.20