Gene detail

Detail information of GWHGAAEX009914/evm.TU.scaffold_26.172

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	1.00E-25	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672110056\|ref\|XP_008793364.1\|	5.19E-40	PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Phoenix dactylifera]
Swissprot	tr\|O49500\|MBR2_ARATH	4.00E-26	E3 ubiquitin-protein ligase MBR2
trEMBL	tr\|A0A061ET19\|A0A061ET19_THECC	1.00E-32	RING/U-box domain-containing protein, putative isoform 1 {ECO:0000313\|EMBL:EOY07793.1}
TAIR	AT4G34040	1.00E-25	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	6816048	6817973	+

Transcript Sequence
>GWHTAAEX009914 ATGGCGGAAAGAAGTTTCTTCCATTCGTCTCCTGCGCATCAAATACGCTACATCCATATATTAAATCCACCAAACATCAATCACAGGAGGCACATTGAAAGAATCATTCCCATATCTATACATCACAGAATAACAAATCACGGTGCGAATTTGCCTCATCTGAATTATTCTCGAACAACTCACAATACTATTTGGAGCAGTAGCCAAAATCTGCTGAATCAAACTCAAAACGTTCCTTGCTACTACAATCGACTCGCTGTTCAGAATGGGATGACCATGGTTTATCTTCCACTGGAAGAGAATTCCAGGGTGGTATTAAAAAGGAAAGCTCCTACACCCCCGGTTTACTATCATGAGAACTTTTACGGAAATCAACGGTTTACTGGCAGTTCTTCCATAATTCCAGCTATACAAAACCATTCTCCGCTGAAACCTCTACCAATTGATTCAGGGCCTCTACATCTTTTACCTGTTGCCAGTGAAGTGTATCAGAGGAATGTTAGATTCCGGCTTAATAATGCTCCTCCTTTAGCAGTCCTGAAACCGGCATGGCACTGCCCATCAATTAGACCAATGCAGTTGCTCCACCCCTCAGATTTTGGTGGGCAATATCACTGCATCTGTCTACCTGGAACATATTTCCAAAGGAATCATTCTTCTACATATCAGTATGATTATCTAATGAGCCCCTCTGCTTCAAGAATTTGCAACGTTGGAGGCGCTGCTGAGCATAGTTCTTATACTTGGATTAATTCAGATAACAACAGAAGCTCGTATGCGAGGGCACGTAATCCGCAAGGAAACTGGACAGGTCCAACCGGCTATTATGATCAAAGACAAGTTTCTCTTACTAATGTGCCATCTTCACATGTTGCTCCAGCTGAACCTATTTCTTTGCCCAGAATTTCTCATCCCACCGATCTTCAAAGCATAACTACAAATAGAGCTTCGAGGAACTTTAATGGCAACGTTCCTGCTTTTTCTTCTGGAAATGTGCAGCAGCTCGAATTAACATCTCTGAATTTGTCAATGGATGATGATATTTCTCCCTTTGCCTACGAGCTCAATTTGGACGATGAAGATAGTGAAATGAGACTTGATATAGACAACATGAGCTATGAGGATCTACTCATGTTGGAGGAGGAGATTGGAAGCGCAAATGGCGGTTTGTCGAGCGATCTCCTTTCTGACTGCATAACAGAAAAACGGCACTGCTCGTCGGCTTCTGATGATGACCAGGATGAATCCCTGTGCCCGATATGCTTGGAAGGGTTCAAGGATGGGGATATGCAGGGAGCGCTGAGGTGCAATCATGTCTACCACGTTGCGTGCATCAAACAATGGTTGGGGATAAACAGAACATGCCCGCTTTGCAAAGCTACGGCTCTGGATGATGAAGATGATGATCAGAAATAG

Network for GWHGAAEX009914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	418	459	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.520
SRP064423	SRR2545915	Juvenile tuber	8.130
SRP108465	SRR5643513	five period of Gastrodia elata	3.580
	SRR5643514	five period of Gastrodia elata	5.090
	SRR5643515	five period of Gastrodia elata	3.610
	SRR5643524	five period of Gastrodia elata	4.860
	SRR5643525	five period of Gastrodia elata	6.090
	SRR5643528	five period of Gastrodia elata	6.280
	SRR5643658	five period of Gastrodia elata	7.220
	SRR5643659	five period of Gastrodia elata	5.610
	SRR5643660	five period of Gastrodia elata	4.280
	SRR5643661	five period of Gastrodia elata	2.610
	SRR5643662	five period of Gastrodia elata	5.170
	SRR5643663	five period of Gastrodia elata	4.680
	SRR5643664	five period of Gastrodia elata	4.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.970
SRP279888	Gastro	Gastrodia elata tuber	8.92
	Juven	Juvenile tuber	5.58
	Mother_Gastro	Mother tuber of Gastrodia elata	9.98
	Mother_Juven	Mother tuber of Juvenile	5.93