Detail information of GWHGAAEX009917/evm.TU.scaffold_26.175
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1605 | 2.00E-121 | TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) |
| nr | gi|672112376|ref|XP_008805431.1| | 3.26E-149 | PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q5S7T7|TIM50_PHYIN | 2.00E-16 | Mitochondrial import inner membrane translocase subunit TIM50 (Precursor) |
| trEMBL | tr|M0SED8|M0SED8_MUSAM | 4.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P13710_001} |
| TAIR | AT3G55960 | 2.00E-121 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 6956356 | 6997661 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009917
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03031.17 | NIF | 93 | 275 | 4.60E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016791 | Molecular Function | phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.740 |
| SRR2545915 | Juvenile tuber | 33.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.040 |
| SRR5643514 | five period of Gastrodia elata | 36.130 | |
| SRR5643515 | five period of Gastrodia elata | 34.500 | |
| SRR5643524 | five period of Gastrodia elata | 30.870 | |
| SRR5643525 | five period of Gastrodia elata | 61.560 | |
| SRR5643528 | five period of Gastrodia elata | 61.220 | |
| SRR5643658 | five period of Gastrodia elata | 53.110 | |
| SRR5643659 | five period of Gastrodia elata | 49.360 | |
| SRR5643660 | five period of Gastrodia elata | 49.830 | |
| SRR5643661 | five period of Gastrodia elata | 51.000 | |
| SRR5643662 | five period of Gastrodia elata | 48.380 | |
| SRR5643663 | five period of Gastrodia elata | 51.280 | |
| SRR5643664 | five period of Gastrodia elata | 51.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.28 |
| Juven | Juvenile tuber | 33.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 53.01 | |
| Mother_Juven | Mother tuber of Juvenile | 44.81 |