Detail information of GWHGAAEX009920/evm.TU.scaffold_26.178
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328543588|ref|YP_004303697.1| | 7.00E-30 | 2OG-Fe(II) oxygenase [Polymorphum gilvum SL003B-26A1] |
| KOG | KOG0143 | 3.00E-153 | Iron/ascorbate family oxidoreductases |
| nr | gi|743781306|ref|XP_010920852.1| | 3.43E-162 | PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like isoform X4 [Elaeis guineensis] |
| Swissprot | tr|Q39224|SRG1_ARATH | 2.00E-73 | Protein SRG1 |
| trEMBL | tr|W5ABE8|W5ABE8_WHEAT | 3.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1BS_CE840DC06.1} |
| TAIR | AT3G11180 | 3.00E-153 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000029 | 7062403 | 7066613 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009920
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 48 | 150 | 3.40E-25 |
| PF03171.19 | 2OG-FeII_Oxy | 199 | 297 | 4.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.920 |
| SRR2545915 | Juvenile tuber | 0.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.250 |
| SRR5643514 | five period of Gastrodia elata | 47.120 | |
| SRR5643515 | five period of Gastrodia elata | 41.420 | |
| SRR5643524 | five period of Gastrodia elata | 36.100 | |
| SRR5643525 | five period of Gastrodia elata | 4.840 | |
| SRR5643528 | five period of Gastrodia elata | 3.000 | |
| SRR5643658 | five period of Gastrodia elata | 3.380 | |
| SRR5643659 | five period of Gastrodia elata | 0.840 | |
| SRR5643660 | five period of Gastrodia elata | 0.340 | |
| SRR5643661 | five period of Gastrodia elata | 0.580 | |
| SRR5643662 | five period of Gastrodia elata | 1.550 | |
| SRR5643663 | five period of Gastrodia elata | 0.310 | |
| SRR5643664 | five period of Gastrodia elata | 4.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 99.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 89.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 78.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 68.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 84.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 112.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 187.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 187.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.78 |
| Juven | Juvenile tuber | 0.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.33 | |
| Mother_Juven | Mother tuber of Juvenile | 14.41 |