Gene detail

Detail information of GWHGAAEX009921/evm.TU.scaffold_26.180

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	8.00E-43	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|593379107\|ref\|XP_007140273.1\|	1.19E-54	hypothetical protein PHAVU_008G098300g [Phaseolus vulgaris]
Swissprot	tr\|O80450\|TGT3B_ARATH	2.00E-43	Trihelix transcription factor GT-3b
trEMBL	tr\|V7B301\|V7B301_PHAVU	4.00E-55	Uncharacterized protein {ECO:0000313\|EMBL:ESW12267.1}
TAIR	AT2G38250	8.00E-43	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000029	7237896	7240128	+

Transcript Sequence
>GWHTAAEX009921 AACAATCAACTATAATTTTTTATTTTTGTATATCGCATACAAAAAATTTACTTATCAATTATGTACTCACACTTAGGGCTTATCACATCATTCATATTTTAGTTTGACTATTTGAATCGTTACGTGGCACTCAAAAAAGTTTACCCAATAATATTTGGACATGTAATAAAAAAAAATAATAAAATATACTCAAATCTTATTAATTTGGACTTTTTTGAGAGCCATGCCAACAGTTCCACATATATTTCTCATAAATTTTTTCTATGCAAAAGAAAGGCGACAATAGGACCACAATTGCACTGAGTTGAAGTTCTAAGCTCGAACTTAAGCTTTTTCAACTGGAAATTAATTTGGATCGAGTTCGAATCAGATTCAACTCGAAAATTATGAGCTTGAATATAATTTTGTTTGGCTGCTAAGCTGAATTTAATCTGAACGAAAAATCAATTAATTTCAAATTAAGTTGTTCAACGAATTTTAGGATTGGCTTGCAAAATAAATTATTCAGAAGAATCTAAAGCATAGTTCAATCAGTTATAATCAAATTGAAGTAAACAATTTAAGAATTTTGAACTACTAATATAAATATGATTAGAGTCAACATGAATTATTTTGAGTATGAAAGCAGAATTGGTAATAGATTTTCGAAAGCAAGGAGGAAGAAAAGTTTATTTTATTCGGGAACGGTAACGAAAATCAAACAAACGCACGCTTTGGACGATAAAGCAATGGGAAAGCAGGGCGGGCGTCTCCGCGTTGAACGAACAGTTTGCAAGGATTTTGGGTGGAAACTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGAGCACCATTTGGTTACAAGAAGCCTAATTGCTCTTGCGTCCATGGAGCAGAGCAGCAGCGAAAGGGTGCCTCAGTGGGGGCCAGCAGAGACCAGAGAGTTCCTCGGCATTAGAGCAGAGCTGGATCAGCACTTTGTGGAGACTAAGCGAAATAAGCCTCTGTGGGAAGCAATCTCGGTAAGAATGCTCGCTAAGGGTCTGTCCCGAACTCCCGATCAGTGCAAGTCCAAGTGGAAGAACCTTCTCACTCGTTTTAAGGGATGCGAGGCATTGGAAGGAGAGGGAAGCAGGCATAATTTCCCCTACTATGAGGAAATGAAGAGCATACTCTCTCGGAGGGAGCAGAGGTTTCTCAGCTTTGATGAGAAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGTGAAGGCGGGAGAGTAAAAAAGAGAAGGAAGAAAAAGAAAAAACAAAAAAGTAAGAATGAGGAAGGAGAAGTGGAGCTGGCACTGAAGGAGCTGACAAAGTGGCAAACGGAGAGGGAAGAGAGGTGGCTGCAGGCAGCGGAGGCCAGAGAGGCGGAGAGAAGGGCAGCCGAAGCTGAGTGGCGGCGAGCAATGGAGGCGATCTCGCAAGAGAGAGCGGACATGGAGAGGACCTGGAGGGAAAGAGAGGACCAACGCCGCGCCAGGCAGCTAGCCAGATCCGACCGTCGCGACGCCGTCGTCGCCGCCATTGCCGCTAGGCTTGGTGTCCAAGATGCAGACCCAGTCTCCAAGGCTCCACCTTGATCCACTGCATTTAGTTGGCTAGTAAATGTAGGGTTTAGGGTTTAATATCATCAACAATGGGTCTACATTGTAATTCCTGCTCCATTCATGCATTTCTATTGGTCGTGGAGTTGGGCACCACTTGTTTAAAAAGTTCATTTACTTTTAAGATACATAGATTTTGTTATAATTGAGAGGAGATTGAAGCCATGTGAAGAAATAATTAGGGTTACTTAACTCGTGAATAAAAAAATGATTGATTCTGGGTTCCATGCA

Network for GWHGAAEX009921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	107	191	3.70E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.990
SRP064423	SRR2545915	Juvenile tuber	1.440
SRP108465	SRR5643513	five period of Gastrodia elata	16.480
	SRR5643514	five period of Gastrodia elata	7.070
	SRR5643515	five period of Gastrodia elata	18.970
	SRR5643524	five period of Gastrodia elata	14.280
	SRR5643525	five period of Gastrodia elata	21.010
	SRR5643528	five period of Gastrodia elata	14.740
	SRR5643658	five period of Gastrodia elata	24.510
	SRR5643659	five period of Gastrodia elata	2.640
	SRR5643660	five period of Gastrodia elata	2.270
	SRR5643661	five period of Gastrodia elata	2.620
	SRR5643662	five period of Gastrodia elata	5.510
	SRR5643663	five period of Gastrodia elata	4.170
	SRR5643664	five period of Gastrodia elata	10.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.690
SRP279888	Gastro	Gastrodia elata tuber	7.15
	Juven	Juvenile tuber	0.82
	Mother_Gastro	Mother tuber of Gastrodia elata	35.01
	Mother_Juven	Mother tuber of Juvenile	5.83