Detail information of GWHGAAEX009924/evm.TU.scaffold_260.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|300710858|ref|YP_003736672.1| | 7.00E-78 | xanthine/uracil permease family protein [Halalkalicoccus jeotgali B3] |
| KOG | KOG1292 | 0 | Xanthine/uracil transporters |
| nr | gi|743766541|ref|XP_010913510.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: nucleobase-ascorbate transporter 6 [Elaeis guineensis] |
| Swissprot | tr|Q27GI3|NAT6_ARATH | 0 | Nucleobase-ascorbate transporter 6 |
| trEMBL | tr|M0TTP1|M0TTP1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P25880_001} |
| TAIR | AT5G62890 | 0 | Xanthine/uracil permease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000257 | 257011 | 267059 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009924
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00860.19 | Xan_ur_permease | 59 | 464 | 2.50E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.420 |
| SRR2545915 | Juvenile tuber | 81.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 84.590 |
| SRR5643514 | five period of Gastrodia elata | 107.120 | |
| SRR5643515 | five period of Gastrodia elata | 89.010 | |
| SRR5643524 | five period of Gastrodia elata | 91.610 | |
| SRR5643525 | five period of Gastrodia elata | 88.000 | |
| SRR5643528 | five period of Gastrodia elata | 61.920 | |
| SRR5643658 | five period of Gastrodia elata | 78.110 | |
| SRR5643659 | five period of Gastrodia elata | 95.870 | |
| SRR5643660 | five period of Gastrodia elata | 91.060 | |
| SRR5643661 | five period of Gastrodia elata | 89.310 | |
| SRR5643662 | five period of Gastrodia elata | 62.050 | |
| SRR5643663 | five period of Gastrodia elata | 85.400 | |
| SRR5643664 | five period of Gastrodia elata | 63.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 91.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 105.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 100.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 80.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 112.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 87.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 112.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 118.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 107.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 107.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 72.58 |
| Juven | Juvenile tuber | 128.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.12 | |
| Mother_Juven | Mother tuber of Juvenile | 59.22 |