Detail information of GWHGAAEX009925/evm.TU.scaffold_260.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|357384644|ref|YP_004899368.1|1.00E-15putative Holliday junction resolvase [Pelagibacterium halotolerans B2]
nrgi|672115567|ref|XP_008780929.1|8.10E-72PREDICTED: uncharacterized protein LOC103700828 [Phoenix dactylifera]
trEMBLtr|M0RQT3|M0RQT3_MUSAM4.00E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P09530_001}
TAIRAT3G529104.00E-42growth-regulating factor 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000257316923339530+
Transcript Sequence

Network for GWHGAAEX009925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03652.14RuvX982314.30E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006364Biological ProcessrRNA processing
GO:0006139Biological Processnucleobase-containing compound metabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.170
SRR2545915Juvenile tuber5.020
SRP108465SRR5643513five period of Gastrodia elata4.250
SRR5643514five period of Gastrodia elata5.850
SRR5643515five period of Gastrodia elata4.480
SRR5643524five period of Gastrodia elata4.880
SRR5643525five period of Gastrodia elata5.290
SRR5643528five period of Gastrodia elata5.200
SRR5643658five period of Gastrodia elata5.480
SRR5643659five period of Gastrodia elata4.930
SRR5643660five period of Gastrodia elata4.830
SRR5643661five period of Gastrodia elata4.540
SRR5643662five period of Gastrodia elata4.830
SRR5643663five period of Gastrodia elata6.260
SRR5643664five period of Gastrodia elata6.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.110
SRR6049655Rhizomagastrodiae_C368-T10_good_12.690
SRR6049656Rhizomagastrodiae_C368-T07_good_13.120
SRR6049657Rhizomagastrodiae_C368-T07_good_13.350
SRR6049658Rhizomagastrodiae_C368-T04_good_13.490
SRR6049659Rhizomagastrodiae_C368-T04_good_13.630
SRR6049660Rhizomagastrodiae_C368-T01_good_13.950
SRR6049661Rhizomagastrodiae_C368-T04_good_13.740
SRR6049662Rhizomagastrodiae_C368-T01_good_12.660
SRR6049663Rhizomagastrodiae_C368-T01_good_13.870
SRR6049664Rhizomagastrodiae_C368-T10_good_14.110
SRR6049665Rhizomagastrodiae_C368-T10_good_14.110
SRP279888GastroGastrodia elata tuber 4.66
JuvenJuvenile tuber6.82
Mother_GastroMother tuber of Gastrodia elata 5.53
Mother_JuvenMother tuber of Juvenile 7.95