Detail information of GWHGAAEX009926/evm.TU.scaffold_260.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|385809475|ref|YP_005845871.1|4.00E-49alanine-synthesizing transaminase [Ignavibacterium album JCM 16511]
KOGKOG02580Alanine aminotransferase
nrgi|743840385|ref|XP_010937250.1|0PREDICTED: alanine aminotransferase 2 [Elaeis guineensis]
Swissprottr|Q9LDV4|ALAT2_ARATH0Alanine aminotransferase 2, mitochondrial (Precursor)
trEMBLtr|M0RJE8|M0RJE8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P18730_001}
TAIRAT1G723300alanine aminotransferase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000257445377470030+
Transcript Sequence

Network for GWHGAAEX009926

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.20Aminotran_1_21555042.70E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00814GPT, ALT Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Pyrimidine metabolismmap00240
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms86.740
SRR2545915Juvenile tuber81.010
SRP108465SRR5643513five period of Gastrodia elata127.670
SRR5643514five period of Gastrodia elata101.020
SRR5643515five period of Gastrodia elata95.660
SRR5643524five period of Gastrodia elata109.730
SRR5643525five period of Gastrodia elata60.550
SRR5643528five period of Gastrodia elata70.850
SRR5643658five period of Gastrodia elata68.550
SRR5643659five period of Gastrodia elata39.640
SRR5643660five period of Gastrodia elata44.890
SRR5643661five period of Gastrodia elata33.910
SRR5643662five period of Gastrodia elata31.800
SRR5643663five period of Gastrodia elata39.780
SRR5643664five period of Gastrodia elata39.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1126.490
SRR6049655Rhizomagastrodiae_C368-T10_good_1114.590
SRR6049656Rhizomagastrodiae_C368-T07_good_1120.200
SRR6049657Rhizomagastrodiae_C368-T07_good_1112.690
SRR6049658Rhizomagastrodiae_C368-T04_good_1148.100
SRR6049659Rhizomagastrodiae_C368-T04_good_1157.100
SRR6049660Rhizomagastrodiae_C368-T01_good_1113.320
SRR6049661Rhizomagastrodiae_C368-T04_good_1132.000
SRR6049662Rhizomagastrodiae_C368-T01_good_1124.840
SRR6049663Rhizomagastrodiae_C368-T01_good_1127.650
SRR6049664Rhizomagastrodiae_C368-T10_good_1147.520
SRR6049665Rhizomagastrodiae_C368-T10_good_1147.520
SRP279888GastroGastrodia elata tuber 80.68
JuvenJuvenile tuber170.03
Mother_GastroMother tuber of Gastrodia elata 226.01
Mother_JuvenMother tuber of Juvenile 236.13