Detail information of GWHGAAEX009933/evm.TU.scaffold_261.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390952858|ref|YP_006416616.1| | 9.00E-25 | serine/threonine protein kinase [Aequorivita sublithincola DSM 14238] |
| KOG | KOG0600 | 0 | Cdc2-related protein kinase |
| nr | gi|672159141|ref|XP_008799326.1| | 0 | PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZVM9|Y1461_ARATH | 0 | Probable serine/threonine-protein kinase At1g54610 |
| trEMBL | tr|U5CUE2|U5CUE2_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN16931.1} |
| TAIR | AT1G54610 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000253 | 79070 | 139989 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009933
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 106 | 390 | 2.30E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_CDK-CRK7-CDK9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.550 |
| SRR2545915 | Juvenile tuber | 21.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.950 |
| SRR5643514 | five period of Gastrodia elata | 24.590 | |
| SRR5643515 | five period of Gastrodia elata | 24.490 | |
| SRR5643524 | five period of Gastrodia elata | 24.150 | |
| SRR5643525 | five period of Gastrodia elata | 22.550 | |
| SRR5643528 | five period of Gastrodia elata | 19.350 | |
| SRR5643658 | five period of Gastrodia elata | 17.460 | |
| SRR5643659 | five period of Gastrodia elata | 30.250 | |
| SRR5643660 | five period of Gastrodia elata | 26.870 | |
| SRR5643661 | five period of Gastrodia elata | 27.480 | |
| SRR5643662 | five period of Gastrodia elata | 28.840 | |
| SRR5643663 | five period of Gastrodia elata | 27.550 | |
| SRR5643664 | five period of Gastrodia elata | 32.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.07 |
| Juven | Juvenile tuber | 35.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.14 | |
| Mother_Juven | Mother tuber of Juvenile | 30.86 |