Detail information of GWHGAAEX009936/evm.TU.scaffold_261.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-123 | FOG: PPR repeat |
| nr | gi|743839670|ref|XP_010937064.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9SUU7|PP346_ARATH | 6.00E-124 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial (Precursor) |
| trEMBL | tr|F6H3U1|F6H3U1_VITVI | 4.00E-166 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46778.1} |
| TAIR | AT4G32450 | 2.00E-123 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000253 | 160368 | 169986 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009936
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 372 | 401 | 0.00078 |
| PF01535.19 | PPR | 404 | 432 | 0.15 |
| PF01535.19 | PPR | 439 | 464 | 1.3 |
| PF01535.19 | PPR | 476 | 499 | 0.92 |
| PF14432.5 | DYW_deaminase | 575 | 687 | 1.20E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.620 |
| SRR2545915 | Juvenile tuber | 14.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.280 |
| SRR5643514 | five period of Gastrodia elata | 8.240 | |
| SRR5643515 | five period of Gastrodia elata | 8.510 | |
| SRR5643524 | five period of Gastrodia elata | 7.330 | |
| SRR5643525 | five period of Gastrodia elata | 7.780 | |
| SRR5643528 | five period of Gastrodia elata | 6.970 | |
| SRR5643658 | five period of Gastrodia elata | 5.510 | |
| SRR5643659 | five period of Gastrodia elata | 12.880 | |
| SRR5643660 | five period of Gastrodia elata | 13.460 | |
| SRR5643661 | five period of Gastrodia elata | 11.350 | |
| SRR5643662 | five period of Gastrodia elata | 13.370 | |
| SRR5643663 | five period of Gastrodia elata | 12.330 | |
| SRR5643664 | five period of Gastrodia elata | 8.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.46 |
| Juven | Juvenile tuber | 12.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.64 | |
| Mother_Juven | Mother tuber of Juvenile | 9.69 |