Gene detail

Detail information of GWHGAAEX009950/evm.TU.scaffold_261.21

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0937	Adaptor complexes medium subunit family
nr	gi\|731389029\|ref\|XP_010649840.1\|	PREDICTED: AP-5 complex subunit mu isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8W0Z6\|AP5M_ARATH	AP-5 complex subunit mu
trEMBL	tr\|D7T6N6\|D7T6N6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26157.3}
TAIR	AT2G20790	clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000253	384467	424954	+

Transcript Sequence
>GWHTAAEX009950 CTGAATCAACGTGAAAATCCTTAAATCCGCTATAGCCGAACAGCTTTTATGCTGAGACATTGCTCCGGGAAAGCTTTACGTAGAGGTTGCGAGGACGAGGAAGAGTGGCATAGGAAATGCCCGGCTGCAGTATAAGAGCAATCTGGATCCTGAATCACCAAGATACAGTAGTATTCTCTCGGAGATTTCCAGTTGTGGAGAAGCGTTGGCGGTTAGCTTGCCAGGGGGAGAACGAGAACGATGGATGCGTACGCCCTCTGCTTCCGAGAGATCCAGAGTTTGCTTCAGCCTTTGCCGAGAGAAAGAGAAGGGAGGGTTCTATTCGTGGACATGGCATCCGTCTTAGTTATTCTACTCGGGATTCAGATTCATGGGCTGATGACCCTATTACTCGACACATTATAATGCTTCACATTAACAAAGATGATGGAGATGAATACAGACTGTGGCCATTGGTGTTGCACTTAAAGGGCATTTTTTGTATTCTTGTTCTACCGTTGGTTGAACCTCAACAATATAAATCATATTTGAGAATGTGCAGGCTTTCAGATTGTGGAAATGCTAGTGGAGCAGATGATGGCCTTTCTTCTCTGCTACTTAATCTTCCTTGCATCACAGGGGCTTGTGTGGTTGCACACACCTTGGGGGACCTAATTACTGGTGATTTAGCAGAACCTGAAGTTGTTACAAGCTTATCTCCATCTGTTGGCGGATTGCTTGATTCACTAACAGGTAGTATAGGCATGCCTGGCATTTCTGCTAGGGCAAAACCTACTTTGGCACCTGTAACAGCTTCAACTACATCAAGCGCTTCATTGGTTAGTACCATCATGTCAGATTCTTCTAAAAGCATTTCCAAACCTTTAGACAAGGATGTGCTCCGCACTTTTATCACGGCATCAATGCCTTTTGGGACACCTCTTGATCTCAATTTCACCAACATATCTGTAATAAAGGCCAATGGATTTTCTTCAGCAGATCCGCCTCTAGCAGACCTTGTGCAGCCTGCTTGGAAGCCTTACCTTTTTAAGGGAAAACAGCGAATACTTTTCGCAGTTCATGAGGTTATCCACGCTGCAATGTATGATAGAGATGAAATTCCAGATGCTATATCAATCTCAGGTCAAGTATACTGTAGAGCTGAGTTAGAGGGACTGCCTGATGTGTCACTGTCTTTAACTGGGCTGAAATTGGCTAATGTTGAAGTTCTATCTTTCCATCATTGTGCCCAAGTATCAGAAAATGGAGTTGATAAGCAAGCTTTTATGTTTTCGCCACCACTTGGTAATTTTTCCTTGATTCACTATGTTGCCTCAGGCTGCCCTGATCCTCCTGTGAAAGGATTCTACCAACTTTCAATGGTTTCAGAAGATGAAGGTGCTTTTTTATTTAAATTAAAGTTAATGGAAAGTTACAAGGCTCCATATATTATGGAATTTTGTACGGTCACGATGCCATTTCCTAGAAGAAGAGTAGCATCTTTTGATGGGAACCCCTCTGTTGGAACGGTTACGATGGCTGAGCACTCTGTTGAGTGGAGAATCATAGCAGGTGGGCGAGGCATCACTGGGAAAAGCATTGAGGCAACTTTTTCAGGAACAATTAAGTTTTCCCCGAGGACATCTTTAAAAGTATCTACTTTAAATAGATCAGTTACTGGGGAAGAAGTTGAACAGGACAGCGATGTGGAGCAGGATGATCTTAATAATACTGCAAACATTGAGGAGCACTTAATGGAAGTAATGAGCAAAGACTTGCCAGCGGCAGAAATGGAGGAGCCTTTTTGCTGGCAAGCGTATAATTATGCAAAAGTCTCATTTAAGATTTCTGGTGGCATGCTCTCAAAAGTATCAATTGATTTAAAATCTGTGAGAATTTATCCTGCTGTGAAAGCACCGGTCGAGTTGTCTATGCAGTCGAGCTCCGGAGACTACATCCTTTGGAACACTTTAGGAAGGTGTCCATCTGCGGTTTATCCTTCCTAAATTTATTATACTATATTTTCTTATGTGAAAATTATATGTGCATGTGTATGTGTGTGCGCGCGCTTGTTTTTTTTTGTGTGTGAATGTATTTATATGTTCTATTAGTAATCTTCTTAAGTTTTCATGTAAGAAGTTACTGCCAAATTACCACCGAAAATTTTGATTTTTCACATTTAATCCATAGTTAAAATTAATAAACTAATATATCAAACGGC

Network for GWHGAAEX009950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00928.20	Adap_comp_sub	299	595	1.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.730
SRP064423	SRR2545915	Juvenile tuber	22.710
SRP108465	SRR5643513	five period of Gastrodia elata	20.820
	SRR5643514	five period of Gastrodia elata	20.520
	SRR5643515	five period of Gastrodia elata	19.840
	SRR5643524	five period of Gastrodia elata	18.420
	SRR5643525	five period of Gastrodia elata	18.320
	SRR5643528	five period of Gastrodia elata	16.240
	SRR5643658	five period of Gastrodia elata	17.650
	SRR5643659	five period of Gastrodia elata	16.500
	SRR5643660	five period of Gastrodia elata	18.950
	SRR5643661	five period of Gastrodia elata	16.330
	SRR5643662	five period of Gastrodia elata	17.770
	SRR5643663	five period of Gastrodia elata	18.370
	SRR5643664	five period of Gastrodia elata	19.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.630
SRP279888	Gastro	Gastrodia elata tuber	42.95
	Juven	Juvenile tuber	31.52
	Mother_Gastro	Mother tuber of Gastrodia elata	29.83
	Mother_Juven	Mother tuber of Juvenile	36.49