Detail information of GWHGAAEX009958/evm.TU.scaffold_261.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-84 | FOG: PPR repeat |
| nr | gi|672116855|ref|XP_008781599.1| | 9.38E-151 | PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LW63|PP251_ARATH | 1.00E-84 | Putative pentatricopeptide repeat-containing protein At3g23330 |
| trEMBL | tr|F6H8V1|F6H8V1_VITVI | 2.00E-141 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB48644.1} |
| trEMBL | tr|F6H8V1|F6H8V1_VITVI | 7.00E-32 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB48644.1} |
| TAIR | AT3G23330 | 4.00E-84 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000253 | 494113 | 495389 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009958
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 52 | 72 | 1.3 |
| PF13041.5 | PPR_2 | 78 | 121 | 3.10E-07 |
| PF01535.19 | PPR | 152 | 174 | 0.75 |
| PF01535.19 | PPR | 183 | 213 | 1.40E-07 |
| PF01535.19 | PPR | 222 | 246 | 0.28 |
| PF01535.19 | PPR | 255 | 280 | 0.29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.970 |
| SRR2545915 | Juvenile tuber | 0.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.730 |
| SRR5643514 | five period of Gastrodia elata | 1.990 | |
| SRR5643515 | five period of Gastrodia elata | 1.670 | |
| SRR5643524 | five period of Gastrodia elata | 1.870 | |
| SRR5643525 | five period of Gastrodia elata | 0.520 | |
| SRR5643528 | five period of Gastrodia elata | 0.270 | |
| SRR5643658 | five period of Gastrodia elata | 0.200 | |
| SRR5643659 | five period of Gastrodia elata | 2.170 | |
| SRR5643660 | five period of Gastrodia elata | 2.130 | |
| SRR5643661 | five period of Gastrodia elata | 2.530 | |
| SRR5643662 | five period of Gastrodia elata | 2.720 | |
| SRR5643663 | five period of Gastrodia elata | 1.900 | |
| SRR5643664 | five period of Gastrodia elata | 2.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.84 |
| Juven | Juvenile tuber | 1.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.62 | |
| Mother_Juven | Mother tuber of Juvenile | 0.69 |