Detail information of GWHGAAEX009959/evm.TU.scaffold_261.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41973.00E-16FOG: PPR repeat
nrgi|672144962|ref|XP_008796384.1|0PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g66631 [Phoenix dactylifera]
Swissprottr|B3H4P1|PP450_ARATH3.00E-153Pentatricopeptide repeat-containing protein At5g66631
trEMBLtr|C4J4F3|C4J4F3_MAIZE2.00E-180Uncharacterized protein {ECO:0000313|EMBL:ACR36053.1, ECO:0000313|EnsemblPlants:GRMZM2G447857_P01}
TAIRAT1G189003.00E-16Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000253498705500624-
Transcript Sequence

Network for GWHGAAEX009959

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21501977.30E-08
PF13812.5PPR_34765350.00053
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.410
SRR2545915Juvenile tuber2.480
SRP108465SRR5643513five period of Gastrodia elata9.280
SRR5643514five period of Gastrodia elata13.820
SRR5643515five period of Gastrodia elata8.380
SRR5643524five period of Gastrodia elata10.480
SRR5643525five period of Gastrodia elata18.920
SRR5643528five period of Gastrodia elata21.550
SRR5643658five period of Gastrodia elata26.810
SRR5643659five period of Gastrodia elata9.520
SRR5643660five period of Gastrodia elata8.010
SRR5643661five period of Gastrodia elata11.150
SRR5643662five period of Gastrodia elata11.220
SRR5643663five period of Gastrodia elata8.750
SRR5643664five period of Gastrodia elata13.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.040
SRR6049655Rhizomagastrodiae_C368-T10_good_19.460
SRR6049656Rhizomagastrodiae_C368-T07_good_111.020
SRR6049657Rhizomagastrodiae_C368-T07_good_19.870
SRR6049658Rhizomagastrodiae_C368-T04_good_18.220
SRR6049659Rhizomagastrodiae_C368-T04_good_19.990
SRR6049660Rhizomagastrodiae_C368-T01_good_111.660
SRR6049661Rhizomagastrodiae_C368-T04_good_19.980
SRR6049662Rhizomagastrodiae_C368-T01_good_19.860
SRR6049663Rhizomagastrodiae_C368-T01_good_19.240
SRR6049664Rhizomagastrodiae_C368-T10_good_110.720
SRR6049665Rhizomagastrodiae_C368-T10_good_110.720
SRP279888GastroGastrodia elata tuber 8.40
JuvenJuvenile tuber8.84
Mother_GastroMother tuber of Gastrodia elata 12.60
Mother_JuvenMother tuber of Juvenile 9.68