Detail information of GWHGAAEX009966/evm.TU.scaffold_261.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297526601|ref|YP_003668625.1| | 3.00E-34 | mevalonate kinase [Staphylothermus hellenicus DSM 12710] |
| KOG | KOG1511 | 9.00E-157 | Mevalonate kinase MVK/ERG12 |
| nr | gi|695052801|ref|XP_009414472.1| | 0 | PREDICTED: mevalonate kinase-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P46086|KIME_ARATH | 3.00E-157 | Mevalonate kinase |
| trEMBL | tr|M0TVX2|M0TVX2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P33700_001} |
| TAIR | AT5G27450 | 9.00E-157 | mevalonate kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000253 | 530533 | 536904 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009966
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00288.25 | GHMP_kinases_N | 131 | 211 | 8.80E-18 |
| PF08544.12 | GHMP_kinases_C | 293 | 350 | 2.10E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00869 | E2.7.1.36, MVK, mvaK1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 | ||
| Peroxisome | map04146 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008299 | Biological Process | isoprenoid biosynthetic process |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004496 | Molecular Function | mevalonate kinase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.570 |
| SRR2545915 | Juvenile tuber | 23.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.980 |
| SRR5643514 | five period of Gastrodia elata | 15.930 | |
| SRR5643515 | five period of Gastrodia elata | 17.950 | |
| SRR5643524 | five period of Gastrodia elata | 19.730 | |
| SRR5643525 | five period of Gastrodia elata | 13.540 | |
| SRR5643528 | five period of Gastrodia elata | 18.280 | |
| SRR5643658 | five period of Gastrodia elata | 14.820 | |
| SRR5643659 | five period of Gastrodia elata | 17.330 | |
| SRR5643660 | five period of Gastrodia elata | 15.760 | |
| SRR5643661 | five period of Gastrodia elata | 16.980 | |
| SRR5643662 | five period of Gastrodia elata | 16.280 | |
| SRR5643663 | five period of Gastrodia elata | 13.900 | |
| SRR5643664 | five period of Gastrodia elata | 11.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.68 |
| Juven | Juvenile tuber | 13.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.52 | |
| Mother_Juven | Mother tuber of Juvenile | 18.87 |