Detail information of GWHGAAEX009974/CADD00779.1.gene


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743880255|ref|XP_010908605.1|1.13E-40PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Elaeis guineensis]
Swissprottr|Q689D6|RPD1_ARATH2.00E-07Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBLtr|Q0DPS2|Q0DPS2_ORYSJ2.00E-40Os03g0667400 protein {ECO:0000313|EMBL:BAF12766.1} (Fragment)
TAIRAT1G791202.00E-30Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000253637984640175-
Transcript Sequence

Network for GWHGAAEX009974

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11955.7PORR2143089.20E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.890
SRR2545915Juvenile tuber1.170
SRP108465SRR5643513five period of Gastrodia elata0.800
SRR5643514five period of Gastrodia elata0.600
SRR5643515five period of Gastrodia elata0.740
SRR5643524five period of Gastrodia elata0.790
SRR5643525five period of Gastrodia elata0.620
SRR5643528five period of Gastrodia elata0.800
SRR5643658five period of Gastrodia elata0.350
SRR5643659five period of Gastrodia elata1.090
SRR5643660five period of Gastrodia elata1.620
SRR5643661five period of Gastrodia elata1.170
SRR5643662five period of Gastrodia elata1.320
SRR5643663five period of Gastrodia elata1.430
SRR5643664five period of Gastrodia elata1.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.450
SRR6049655Rhizomagastrodiae_C368-T10_good_10.710
SRR6049656Rhizomagastrodiae_C368-T07_good_10.910
SRR6049657Rhizomagastrodiae_C368-T07_good_10.270
SRR6049658Rhizomagastrodiae_C368-T04_good_10.250
SRR6049659Rhizomagastrodiae_C368-T04_good_10.070
SRR6049660Rhizomagastrodiae_C368-T01_good_10.190
SRR6049661Rhizomagastrodiae_C368-T04_good_10.470
SRR6049662Rhizomagastrodiae_C368-T01_good_10.450
SRR6049663Rhizomagastrodiae_C368-T01_good_10.300
SRR6049664Rhizomagastrodiae_C368-T10_good_10.580
SRR6049665Rhizomagastrodiae_C368-T10_good_10.580
SRP279888GastroGastrodia elata tuber 0.60
JuvenJuvenile tuber0.72
Mother_GastroMother tuber of Gastrodia elata 0.69
Mother_JuvenMother tuber of Juvenile 0.57