Gene detail

Detail information of GWHGAAEX009979/evm.TU.scaffold_262.4_evm.TU.scaffold_262.5

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|91781868\|ref\|YP_557074.1\|	8.00E-152	FAD-binding oxidase [Burkholderia xenovorans LB400]
KOG	KOG1231	0	Proteins containing the FAD binding domain
nr	gi\|743872963\|ref\|XP_010906694.1\|	0	PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q94AX4\|DLD_ARATH	0	D-lactate dehydrogenase [cytochrome], mitochondrial (Precursor)
trEMBL	tr\|M0TZ53\|M0TZ53_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P10440_001}
TAIR	AT5G06580	0	FAD-linked oxidases family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000260	164673	242607	-

Transcript Sequence
>GWHTAAEX009979 ATGCAAGCCCCCGATGCCTTCGTTCACGAGCTCAGAAGCTTTCTGCAGGATAGCATGACTGTAGACTATGAAGAGAGGTACTTTCATGGAAATTCACAATATAGCTATAAGAAAATTGCTAATATTCCAGATGTGGTTGTGTATCCCAGGTCACAGGATGATGTACAGAAGATTATCATTGCCTGTAACAAGTACAAGGTTCCCATTGTGCCTTATGGAGGAGCTACATCACTTGAAGGCCAAACTTTAGCTCCTAATGCAGGCGTATGCATTGATATGTCAATGATGAAAAACATAAAAGCATTGCATATTGAGGACATGGATGTAGTTGTTGAGCCAGGGATTGGTTGGGTGGAGCTCAATGAGTATTTGAAACCTTTTGGTCTTTTCTTTCCGCTTGATCCAGGGCCTGGTGCTTCCATTGGAGGCATGTGTGCCACTCGTTGTTCTGGTTCTCTTGCCGTAAGGTATGGAACAATGCAGGATAATGTCATTAATCTCAAGGCAGTTTTGGGGAATGGAGATGTTGTTAAGACAGCTAATCGGGCTCGAAAGACTGCGGCTGGGTATGATTTGACTCGGCTGATGATTGGAAGTGAAGGAACACTTGGCGTTATAACAGAAGTGACTTTACGCCTACAAAGGCTTCCTCAGCATACAGTGGTTGCAATGTGCAACTTTCCAACCATTAAAGATGCTGCCAATGTAGCTATTGCAACTATGCTATTAGGAATACAGGTTTCAAGGGTTGAATTGTTGGATGAAGCATTGATGCATGCTATCAATAACGCAAATGGAAAAAGATTGCCTGAAGTTCCAACATTGATGTTTGAATTTATTGGCACAGAAGCATATGCAAGAGAGCAGACTATGCTTGTCCAGAAGATTGTCGCTGAGCATGATGGCACTGATTTTGTTTTTGTTGAAGATTCAGATGCTAAAACAGAATTGTGGAAGGTAAGGAAGGAGGCTCTTTGGTATTGCTATGCCATGGCACCTAATTTTGTAGGAATGACTACGGACGTTTGTGTCCCTTTATCGAAGCTTGCAGATTGTATATCAAAATCGAAACAAATTCTCGATGAATCACCATTACTTTGCTTTGTAGTTGCACATGCTGGTGATGGGAACTTCCATACACTCATCTTATTTGACCCCGAGAACAAGGAGCACGAGCTAGAAGCAGATAGACTGAATCACTCCATGGTTTCCACAGCATTGTCGATGGAAGGAACATGCACTGGAGAGCATGGTGTCGGCATTGGTAAAATGAAATACCTTGAGGAAGAACTGGGCATTGGGGTATTGCAGACAATGAAAAGAATAAAGACTGTTTTAGATCCAAACAATATCATGAATCCTGAAAAAATCATTCCTCCACATGTGTGCGTGTGATGAAGATGTCATTCATGTAAAGCCTTATTGCATTATATTTTATACAACAAATAAAGCTTCTTTCTATTTATAACCTGTTTACTTTATGTGTAACTGAATGTCACTTTATTGTTATTAATCAAGTTTAACTTTTGCGAGAACATGCTGGCAGTTGTGCTTGTGAGTTTACTTTCAGAGTGTTGCAATAAGATGTCTCTTCTTGCATGACTACTTTTAGATGATGAAAAGATTATTGATAATCCTCCATCAAAAGGGAAGTTGCCTCTTTAAGTTCCTTAAATTGAGAAGATATAACAGAAAAATAGCGCTCTCTCTGACGTGCTCAATACTTTTCTCTGCTGAGAATGTCTTAAGTTGCTGGTAAAGCACTCAAAGCTTATATAACTTATCAAGGAGCTCAAGCTGTCACTATAGCCTTGTGTTGGTAAACACTCAAAATCCTAAGGCTAGAGTTTAGGTTCTCTTGAGCTATCGTCACAAGGTCGACTAAAGAGTTGGCCTGGATCTCAGCATAATAGTAATGTTAGCGTTAAACTGCTAGTCAACTATATGTAATTGAAGTGCGTGATTAGCATTTCTCTAATTAACAGCTCCCACCTCTAAAGTATTTAGTGTTAACGACCTATTGCTACAACTCAATCTAATAAATGACTATTTTGGACAGCATGGATCAAAGTAAGCAGCTTATTGAAGGTCATTTCTTTCATTGCCCCCATGTGAGGTGCGAGAATGAAAGCATGCTCATCTCAGACCTGCAAAAACTAATGATTAATAAAATAAATTTTCTATAGGGTCTATAACTTAAAAAATATTATAATGACATTAGGATCATAAGTATAGAAATATAAAGAATTTCAAAATGATCTCCTGTGGTTGAAAAATCAATTATTAATTCCTTACCTAAACGACTTGTAGAAATGAACAAAGTATTGTAAATGACGAGAGTATGAGGATCTAGTACAGAATATGCATTTAAACCCTTATCTCCAAGAGCATATGAAACAATTGTCGAACCTTTAGAGAAGGATTTAGGGTGTTCAAGAGCATCTGAAGTTACTTAAACAATAATAATAATATAAATGCTTAAATTAAAGGGAGATTGTCTTTTAACAATTTTTCCTAGTTATAGTTGATGTGCGGCAATTTTTTTCAAATAATAGAATCAAGCATGTCTTTCATCAGCCGCTGCAATTGGGTCAAACATGTTCAAACTTGTGATTCGCATGATCATATTAAGAATATTTTAGTATAGTATAAGAATAACAAACTTTCAATCATTAATTAAATCATATCTCATCACAGAAGTAATTACAGAGTGAACTCATAATCCCAATACAACTTAAAAATGAAATGAAATAATGTAAAATACAATGATATGCAACGTATAATAATGGTGGCAGATGAGGTCCTCACCTCTCAAGTATCCGCACATCTACTTCAAGAATTAGCCTTAAATCTTATGATTTTTTATCATACACATAAAAAAAGCTTGACTATTGAATCAATTAGAATAATCTAAATACTTGGATATCAAAATTATACATTAAAATTAAAATGTGTGCAAAAAGTAAACTAGTTATGCAGATAATAACAAAAAATAAAAAAGGAGTAACAATTTTGCCAATAGAATATACTAGCAATTTCCTACATAAATATCAAGTAGGCTATAACAAGTAAAGAGGTGTATCACTAAAAATCAAATCACATGACAGGACGAGAGAGCTCGAAACATATGCAGAGTAAATAAATTAAGCTGATTATTGGCATGACATAAATAATTTCATGTTATCAATATTGTTATGCCTAATTTCTAAATATACTTTCTAAGTGAGCATTCTCATAAGCTGAGAATTCATACAAATATGTTTGCATGTTAACGGTTCCTATGATATTTACAACACAATATGTACCAGCCCTCCTTGATGGACAATGGTTTTGGTCTCCGTATCTCTAGGATGGACAATGCCCAATCTGATATATGTACAGATTCACAAGGATAGTCTCTTTAGAACCATTTGTGAAAGTCGTCCAGCTTTATATAAGACAATAACATGCTAATTTTTATAGGGAATGCAAAACTAAAAGTGACAACAAGTGTTAAGTAGTGGATATGACAAAATTCATGGTGTAATCATAAAACTGTGACTATGGCAACAAACAAGCAACAAACAAGCAACAAACATGGTAGAAGCAAAATGTGATCTTAAGCTAGATACTTACTGTAAAAAATGATATTCAAGTACCTACAAATCTTTTGTCAAATCAATAAAATTCAAACAAGGGAAAGCAAAGTCTCCATGATATTTGAAATTTTCAATGGTTTGGGTTTGATTATTAGTATTAACATGGCAAAAATACATTATAATCTAAATTACAGTCATAAGTTCATAAATATGTCCATTTACTCATTTTTAATTCTATAAAAATATTCTATATACACATTTATAAAGATATGAAATTATTTTATTATTCCACAATTCATTAAAATTGAAGAGAAAAGCTGCAGGACTTAGGTGTTGGCTAGCTTTCTAATGTTAGTATTTCTAATCTAAACCAAAGATTGCTTGGCTAAGAGGTCACCAGAAGTTAAATGCTCAACCTATTAATCACGTTCTAAGCTTCTTAAACTGAAGTGTTGGTCAAATTAGGGTAGTTCACCCAAGAAAACAACCTAAGGCTATCGGGAAAAAAAGCCCAAGCACATATAAAAATCATCTCAAGTTCCAAGGTGATGATCTAAAAATAGAAACTCTTATATCATCTAAACTAGTTCCAAAGGTGCTGAGGTGGGAGAAAGGTGGTGTGAGCTTAAGGCTAACTCCTCTACTCATGGTCATATGGTATCATTATAAGGCGAGGGAAGTGTACTAGAATCCTAAAGCTTAAATAATTTATTTTCACACCAACATTAAGATATGATATATAAAAAAATCAATAAATGGTAACAGTTTAGGCTAGATCTAACTAATCTCCAACTAGATGGGTTTACTTAGGTTAGTTGGGGTCTAGCTAGGTTTCAAGTTTCTATCACAAGGCTAATTGGTTTATTGGGTTCTCACTGGTTTAATTTATTGTTTTCATCATAAATTAGGGTTTGGAGTTCAAAGGAACCCAACTCTTATAGCAAAACATTAAGCTATTATAAAGTAATAAGCTAGAATGACAAGGCTTCAGCCAACAAGGAGTGGTCCTATAGTTCAAGACCTAAGTTATAAATTAGGGTTTCAATGGTTAGGCTAAGGCTTAATCTAGAGCTATTAGATACTCTTATGATAGAAAATAGTTGCAACATAGCATTTATATTATATGGTTAAGCATGGTTCCATAAATAAAACAAGTTCTAGGCTGTTAAGTTTCTCATCCAAGATCTAAGTATTTAACCTTAGACCCATCAATTTGAGATCCCAAGGGTTTAAATAGAATTCTTAAATTTTTAAATGAGTTATTAACATCAATCTGATTCATTGATTAAGCTTTATGTATGTAAATTATTAAGCATACAAGCCATACAATATAAATATGAAGCGAATTATGAAGTATATAAAACATGTGATCAACCATTCATATATTAGGTTTAGCTTGCATATGCATTCAAGACTTTTAATATACAGGAATGGAAAGCTAGTTTAACTTATAAATGCATAAGCTATGCATCAAGTGCAAGTGATGATATGATAGTTTCTATCCATATGGTGATTCATATCCATGCATATGCTACGAGTCACTGTGGAATAGCTCATAAACCCAAGAAAAAATGATTGCATAAGCAACTTAAAACATGTTGATAAGGTTAATAGTAAGTACCATTTACTTTATCAATAATCTATGTAAATAATAAATGGTAAGGAGCACATGATTTATAATGATTTGAAGGGTTATTTTAAGCACACAAGGTTTAATCACATGCAACCATGCATTAATATCTATATAATAAGCTTATTGATATGGTTCTAAATAATGTGACATTGCTTAATATTAATCATTAAAGAAATTTAAAAGGACAAAAGTTAAGCATGAAGTGAAACATGTGCCACTCAAGTGGCTAGCCTAGATTAACCCAGGCGCACGAGCAAGGCATAACCCATTCATTGAATCACAACCATGAGCTTAATAACGAAGCTATAAACGATGTACAGTTAGAATCTTATTATCATCAAGCCTATAAAAATAAGATTAAGTGTGGAGACTACAATTGAACATACTTAACTAGTTCATGTAAATGCACATGCATGAGAAAAATATGTAAACCCATCATAATGCAAGCAGAAATGATTCAAGCTGCATCTAATCATTAAGTTAAGCAAGGCTTAATCACATAGTGTAGGTGTTGAATCAACACTTAATGGAGACATAAGGGTGGTTAATTAGCATTGGAACTAAGCTAAGAACAACATTAAATCAAACTAACTTAAGAGAGTCCAAAAGAGAAAATGAGTCACCCAAGGTGGGTCTAGTTTCAAGATTGAGTCCAAAGGCTTCAGTGGACACCAGGCTTCAAACTCCATCCTTTGCAACAAGTCTTGTGCCATGGAATGGTGAGCTAACTCTATGAATTCAATTATGTAGAGCTAAGGAAGGGGAGAGGGTTCCTTACTGTCTTAGGAAGATTCACTGGTTGATGAGCTTAAAGCTTAATCTGAGGATGCTAAAGGGTGTTCAAGGAGTTGATTGGAGGCTTTGAAGTGACCGGAAGGTGGCTAAAGGCTCTATACAGAGGAGTTGGTCGAGACGTGAGGAAAATGGAATTCTCTGGTCTAAGGGCTCCCAAGGAAAATTAGGGATTCTAAAATCTTTAAGAGGTTATATGAAAAAATTTAGGCCACGTAAGATGGTCCTTTTTGGTTTTGGAAACGTTAGCACACTATCGGCTAAGATTAGCAGGGGGTGTATATCTCTGTTGCAATTGGGATCCCTCTTCTTCTGTCTGCTTGTTATTACATTTGTGCTAGGTTATGAATAGGGAAGTTACTCTATCCGTTTCTTCAAACCTCCCCCAGCTCAAGAAAGTCCTCTATCTCTCCTAACTTAGGTTGCCTTCTTTTTTGTGAAGTCTCACGAATAGATTCGATACTCCTCATCTTAGTCCCCCCTATTAAGAAGGCCACAGCGCCGGATCCGCTTCGCAACCGCCTCGTCGCCAGTAGCAACCGCGTCGCCACCACGTCGGAGCCGCGTCTGAGCCGTCGTCGCGAGCAGCGTCCGAGCAGCGTCGGATCAGCGCAAACGCGACAGAGCCGCGTCCGAGCAGCGTCCGAGCAGTGTCGGATCAGCGTCAGAACCGCGCCGGAACAGAGCCGGAGCCTCATTGCCACTGCGTTGCAACCTCGTCGCCACCGCGTTGACATCACCTCCGTCGTCGGGTTTTCGAAGGACGTCAGCTATTCATTTGCATCTCACTCCCTCTAGCTCTCTATCTTTCTATCTCTCTCTCCCAATAGAATTTCAATTCAAAGAAGAGAAATGCTGTATCATGAACTTATGCAACGT

Network for GWHGAAEX009979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.22	FAD_binding_4	43	179	2.80E-35
PF02913.18	FAD-oxidase_C	216	457	9.50E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00102	LDHD, dld	Metabolic pathways	map01100
K00102	LDHD, dld	Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0071949	Molecular Function	FAD binding
GO:0003824	Molecular Function	catalytic activity
GO:0016491	Molecular Function	oxidoreductase activity
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.160
SRP064423	SRR2545915	Juvenile tuber	3.710
SRP108465	SRR5643513	five period of Gastrodia elata	1.500
	SRR5643514	five period of Gastrodia elata	1.780
	SRR5643515	five period of Gastrodia elata	1.430
	SRR5643524	five period of Gastrodia elata	1.700
	SRR5643525	five period of Gastrodia elata	1.200
	SRR5643528	five period of Gastrodia elata	0.530
	SRR5643658	five period of Gastrodia elata	1.270
	SRR5643659	five period of Gastrodia elata	1.040
	SRR5643660	five period of Gastrodia elata	0.990
	SRR5643661	five period of Gastrodia elata	0.790
	SRR5643662	five period of Gastrodia elata	0.860
	SRR5643663	five period of Gastrodia elata	1.820
	SRR5643664	five period of Gastrodia elata	1.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.250
SRP279888	Gastro	Gastrodia elata tuber	1.53
	Juven	Juvenile tuber	1.00
	Mother_Gastro	Mother tuber of Gastrodia elata	2.18
	Mother_Juven	Mother tuber of Juvenile	0.88