Gene detail

Detail information of GWHGAAEX009985/evm.TU.scaffold_262.13

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|114327447\|ref\|YP_744604.1\|	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Granulibacter bethesdensis CGDNIH1]
KOG	KOG2263	Methionine synthase II (cobalamin-independent)
nr	gi\|695022457\|ref\|XP_009398356.1\|	PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q2QLY4\|METE2_ORYSJ	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2
trEMBL	tr\|M0SQW0\|M0SQW0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P21470_001}
TAIR	AT5G17920	Cobalamin-independent synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000260	304540	317620	-

Transcript Sequence
>GWHTAAEX009985 ATGGATATGATACGAAGAAAAGTTGTCATACACCGCCATTGTCTTCCCTTGCCATGGAATATTGCGGTGGTTCGGGTGGCCAACATCCAACACCTCCTTCTGCACCACGACAACGTTCCTCGCAAAAGAAATATGGCATCACACATTGTTGGATACCCTCGAATGGGGCCGAAGAGAGAGCTTAAGTTTGCTCTTGAATCATTCTGGGATGGTAAAAGCAGTACTGAGGATTTGCAGAAAGTTGCTGCTGATCTGAGATCTTCCATTTGGAAGCAGATGGCTGATGCCGAAATCAAATACATTCCAAGCAACACTTTTTCCTATTATGATCAAGTTCTTGACACAACTATGATGCTTGGAGCAGTCCCAGAGAGATATAACTGGAATGGTGGAGAGATTGGGTTTGACACATACTTTTCAATGGCGAGAGAAAATGCTTCTGTACCTGCTATGGAGATGACCAAATGGTTTGATACCAACTACCACTTCATTGTTCCTGAATTGGGCCCAAATACCAAGTTCTCATATTCTTCTCACAAAGCACTTGGTGTTGATACAATTCCGGTGCTTATTGGACCCGTGACTTATTTGTTGCTCTCTAAGCCACTGAAAGGAGTTGAAAATTCCTTCCCAGTTTTATCACTCCTAGAACACATTCTTCCCATCTACAAGGAGGTTATCACTGAGTTGAAAGCTGCTGGCGCTTCATGGATTCAATTTGATGAGCCCGCCCTTGTCAAGGACCTTAATTCTCACAATTTGGAAGCATTTACCAAAGCCTATACAAATCTTGAATCATCTCTGCTTGGATTGAATGTGCTCATTGAGACATACTTTACTGATGTAACGGTTGAGGCATATAGAACTATCACTGCATTGAGCGCAATTACTGGTTTTGGATTTGATCTTGTTCGTGGAACCAAGACCCTTGATGTGATCAGAAGCGCAGGATTCCCTTCTGGAAAGTATCTTTTTGCTGGAGTTGTGGATGGCAGGAACGTTTGGGCAAATGATCTTTCTACCTCCCTGTGCACGCTTCAGAATCTTCAGAGTGTTGTTGGCAAGGACAAGCTTGTTGTCTCAACTTCTTGCTCCCTTCTTCACACTGCTGTTGACCTTGAAAATGAAATAAAATTGGATGATGAAATTAAATCATGGTTGGCCTTTGCTGCACAGAAGGTTGTAGAAGTTAATGCACTCGCTAAGGCTTTGTTTGGTCAAAGGGATGAGGCTTTTTTTTCTTCAAATTACGCAGCTCATGCTTCAAGGAAGACATCTCGTCGTGTGAATAATTCTGAAGTTCAGGAGGCTGTCTCTTCTATGAAGGGTTCGGACCACCGCCGGGCAACAAAAGTTAGCGCAAGATTGAATGCCCAACAAAAGAAACTAAACCTTCCATCTCTTCCTACCACGACCACTGGATCGTTTCCCCAAACCATCGAACTCCGGAGAGTGCGCCGGGAATATAAGGTCCACAAGATCACTGAGCAGGATTATGTGAATGCCATTAAGGAGAAAATTAGTAAGGTTGTTAAGATTCAAGAGGAATTGGATCTTGATGTCCTTGTCCATGGAGAACCGGAAAGAAATGACATGGTCGAGTATTTTGGTGAGCAACTGTCTGGCTTTGCCTTTACTGTTAATGGCTGGGTTCAATCTTATGGCTCCAGATGTGTCAAGCCCCCCATCATCTATGGTGATGTGAGCCGCCCCAGAGCCATGACAGTCTTCTGGTCCTCCATTGCCCAGAGCTTGACCTCTCGCCCAATGAAGGGAATGCTGACCGGACCAGTCACTATCCTTAATTGGTCCTTTGTCCGGAATGACCAGCCGAGATTTGAGACCTGCTACCAGATTGCCCTTGCCATCAAGCAGGAAGTAGAGGATCTCGAAGCTGCAGGCATTGGTATCATTCAAATTGATGAGGAGGCTTTGAGGGAAGGCCTTCCTCTCCGCAAATCCGAGGAGGCTTTCTATTTAGAATGGGCTGTCCACTGCTTCAGAATCACCAACTGCTGTGTAAAGGAAACCACTCAGGATACCTTCCATGGAGGAAATTGCTGAGCGAATCAGGAAGATGCTCACAGTGCTTGAAGCCAACATTTTGTGGGTTAATCCGGACTGCGGACTCAAGACCCGCAAATATGGTGAAGTCATGCCCGCTCTCGCCAACATGGTGGCTGCTGCTAAGCTGCTTCGTGCTGAGCTCACTAGTTCCAAGTGAG

Network for GWHGAAEX009985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08267.11	Meth_synt_1	47	352	1.60E-109
PF01717.17	Meth_synt_2	468	683	9.20E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00549	metE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270
		Selenocompound metabolism	map00450

Gene Ontology

GO term	Ontology	Name
GO:0009086	Biological Process	methionine biosynthetic process
GO:0008652	Biological Process	cellular amino acid biosynthetic process
GO:0008270	Molecular Function	zinc ion binding
GO:0003871	Molecular Function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.930
SRP064423	SRR2545915	Juvenile tuber	2.760
SRP108465	SRR5643513	five period of Gastrodia elata	0.560
	SRR5643514	five period of Gastrodia elata	0.210
	SRR5643515	five period of Gastrodia elata	0.290
	SRR5643524	five period of Gastrodia elata	0.060
	SRR5643525	five period of Gastrodia elata	0.070
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.170
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.060
	SRR5643662	five period of Gastrodia elata	0.120
	SRR5643663	five period of Gastrodia elata	0.020
	SRR5643664	five period of Gastrodia elata	0.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.820
SRP279888	Gastro	Gastrodia elata tuber	0.65
	Juven	Juvenile tuber	0.63
	Mother_Gastro	Mother tuber of Gastrodia elata	1.70
	Mother_Juven	Mother tuber of Juvenile	0.07