Detail information of GWHGAAEX009986/evm.TU.scaffold_262.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|114327447|ref|YP_744604.1|05-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Granulibacter bethesdensis CGDNIH1]
KOGKOG22630Methionine synthase II (cobalamin-independent)
nrgi|695022457|ref|XP_009398356.1|0PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q2QLY4|METE2_ORYSJ05-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2
trEMBLtr|M0SQW0|M0SQW0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P21470_001}
TAIRAT5G179200Cobalamin-independent synthase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000260348143353787+
Transcript Sequence

Network for GWHGAAEX009986

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08267.11Meth_synt_1483621.20E-120
PF01717.17Meth_synt_24517748.10E-155
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00549metE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0008652Biological Processcellular amino acid biosynthetic process
GO:0009086Biological Processmethionine biosynthetic process
GO:0008270Molecular Functionzinc ion binding
GO:0003871Molecular Function5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms190.960
SRR2545915Juvenile tuber236.610
SRP108465SRR5643513five period of Gastrodia elata385.410
SRR5643514five period of Gastrodia elata238.330
SRR5643515five period of Gastrodia elata449.750
SRR5643524five period of Gastrodia elata371.620
SRR5643525five period of Gastrodia elata295.770
SRR5643528five period of Gastrodia elata566.460
SRR5643658five period of Gastrodia elata538.170
SRR5643659five period of Gastrodia elata346.690
SRR5643660five period of Gastrodia elata336.430
SRR5643661five period of Gastrodia elata378.050
SRR5643662five period of Gastrodia elata353.630
SRR5643663five period of Gastrodia elata318.010
SRR5643664five period of Gastrodia elata220.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1312.890
SRR6049655Rhizomagastrodiae_C368-T10_good_1443.810
SRR6049656Rhizomagastrodiae_C368-T07_good_1335.750
SRR6049657Rhizomagastrodiae_C368-T07_good_1275.080
SRR6049658Rhizomagastrodiae_C368-T04_good_1240.140
SRR6049659Rhizomagastrodiae_C368-T04_good_1229.160
SRR6049660Rhizomagastrodiae_C368-T01_good_1289.110
SRR6049661Rhizomagastrodiae_C368-T04_good_1310.210
SRR6049662Rhizomagastrodiae_C368-T01_good_1457.970
SRR6049663Rhizomagastrodiae_C368-T01_good_1355.740
SRR6049664Rhizomagastrodiae_C368-T10_good_1406.210
SRR6049665Rhizomagastrodiae_C368-T10_good_1406.210
SRP279888GastroGastrodia elata tuber 335.76
JuvenJuvenile tuber441.00
Mother_GastroMother tuber of Gastrodia elata 576.94
Mother_JuvenMother tuber of Juvenile 454.65