Gene detail

Detail information of GWHGAAEX009988/evm.TU.scaffold_262.17

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1938	Protein with predicted involvement in meiosis (GSG1)
nr	gi\|743761313\|ref\|XP_010941577.1\|	PREDICTED: trafficking protein particle complex subunit 8 [Elaeis guineensis]
trEMBL	tr\|I1GMH8\|I1GMH8_BRADI	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G06380.1}
TAIR	AT5G16280	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000260	394343	504376	+

Transcript Sequence
>GWHTAAEX009988 TGTCAACCCTAGAATCGCAAGCAGTCGATCACTGCTCTTCATTCGGCTAACCTAAAATCGCAAAGAGCGATCTCCCTCCACCCGTCGATCGCCTCCTCAAGCTTGTCGATCGCACCTGTCGATCGTGCCTCTCCACGTAAGGCATCGACCCCTTCTAACTCCCTGTCTTCGTTCCTCCTCGATCGATCGACGAAACCTCCTTCTCGGCTTGGAGCCGAGAGCCGAGAGTACCCGTTGGTCTTCCCTCTCGGCTGGAGGCCGAGAGAAGCCTCTTCATGTTGGTTCTACCTATGATTTTTAGGTAGTTCCGGCTTTGTCGCCAACGGTGGGTTCGTTAGGCTCAGGAAAAGTAGTGCATACCAGACAGAATGACAATCTGTGCTCGAAAGGGCTGAGGTTCTTTGTCGGTAAAGCACAGTGTGATAGGATTCAGCAAGCTATGGTTATGTTGATGGATCCGATCAGATCCTTACTTGGAAGAATGCTATTAGAAGAAATAAGTCCTGTTGTCATGGTGCTTTCAACTCCACTTGCTGAGGAAGCTTGCATAAAAAATGGTCTCAATTTTGTTGAGATGCTGCTTCCATTTTCTGTTTTCAACAAAATAGATGTACCTGTTCGTACAGCAAGTGATCAGCCCCACAGGTTGCAGATGCTTAAGCTTCGGCTGGTTTATGCTTTTGAAGTTCACCAAAAAGATTACAAGGATGCGGAAGATCATTTGAAACAATTGGTGATTGAAGCTGCCAAGGCGTCCCTTTCCGATTTGCAGCCCGAACCTGCTCAACTTGAAGCTATTCTTAATGAAACTGAGCCGAACTTTCTCCCATCTTGGATTCAAATCTTCAATAAAGAGCTGAGAAAAGCTATTTCTTTCTCTGAGCACGAAGCTTTTGATCATCCAGTGGCATGTCTTTTAGTTGTCTCAACAAAGGATGCACAGCCAATAAATCGATTTGTTGATCTATTCAACACTGGCCAGTTACCATCGCTTTTTAACGATGGTGCTATGGATCCAAAAATTCTGAAGCAGTATCTTTTGCTTCATGACAATACTGATGGAACAATGGACAGGGCTACTGGCATTATAGCTGAAATGAGAAGTACATTTGGCTCCACTGACTGCAGATTATTGTGTATCAATTCTTCTACTGATGAAAATGGTGAATTAAAAGATAACCCTTGGCTAAATGTTAAAGCCCATTTGTCAGATAACCAAAAAATAGGCTCGTTTCTTAACGTTGATGATCTTTTTGAGATAAAAGATTTTATGCAAGAGTTGTGTTCCAAGCACATAATTCCATACATGGAACAAAAAATACGTTACCTTAACCAACAGGTTTCTGCAACTAGAAAAGGCTTTAGAAATCAAATTAAAAATCTGTGGTGGAGGAAAGGAAAAGAAGATGCATCTGAAATTGCTAGCGGACAGATGTATACATCCAGTTCTATTGAATCTCAAATCAGAGTTTTGGCTGACCATGCTTTTATTTTGGGTGATTATGAGTTAGCTTTATCAAATTATAGGTTACTTTCTGCAGATTACAAACTTGATAAAGCCTGGAAACGCTATGCTGGTGTACAGGAAATGATGGGACTTGCATACTTTATGCTAGACCAGTCAAGGAAGGATTCAGAGTTTTGCATGGAAATTGCTTTTAATACATATCTGAAACTCGTGCCCTTGGCTCAGAGAAATGCTACAAGATGTGGCCTCTGGTGGGCAGAAATGCTGAAGGCCAGGGGCCAATATAAAGAAGCAGCGAGCATTTATTTTCGCATTTCCAGTGAGGAGCCACCTCTACACGGAGCAGTATTACTTGAACAGGCTTCATACAGCTATTTATTTTCTAAACCACCTATGCTGTGCAAGTATGGTTTTCATCTTGTTCTTTCTGGCAATCGCTACTATGTTTCGGACCAGATACCACACGCACTTCGAACTTACATAAATGCTCTCTTAGTGTACAGAGCAATTCCCTGGAATTTTATTCACGACCATGTTCACTTCAATATTGCGAGGTGGTATTCTTTTGTGGGGATATTTGAAGCGTCCTTGGAGCACTTGTTGGAAGTTCTTGCGTGCAGTCATCAGTCATTGATAACCCAAGAGTTATTCCTGGGAACTTTCTTCCAAATTGTTGAGACTATGGGGAAGATATTTGAAGTTAATAGGCTTCCGCTTCCTGTTTTTAATATGTCATCCGTAAAAGTTGTTTATGAAGATCATCGTACATACGCCTCAATTGCAGATGTTAACGTAAACGAAAACACATGGAAATCATTGGAGGAAGAAATAGTTCCTTTGACATCTACTATTAAATCGAATTGGCTGGAATCAGAAACGAAGCTGTCTTTAAAAACGTATGATGACTCTCGAGTTTGTGTTGTTGGAGAAGCAATAAAATTGCATATTGAATTCAAAAATCCTCTTCAAATTCCAATTTCTATTTCTGGTATTTCTCTTATTTGTGATATCTTCAAAAAGTCTGAAGAGACAATTTTTGATGGAGATATATCTTGTTCAGTCGATGCTGAAGAACTAAAAGAGGCTCCTAGTTGTAGAAATAGAATTAGCGATGCTGCTTCTCTCGTCGTGTCAGAGTTTGATCTTGTTCTTGGTGGAGGTGAGGTTAAAAGGATACAAGTTGATGCTACACCACAAATTGAAGGAGTACTGAAAATACTTGGAGTCAGGTGGAAGTTATCGGAATTTGTTGTTGGTTATCATTACTTTGAACCTTATACACTGAAGAAACACAAGAAAGGAAAGCAAGTATCTGGGAATTGGTCAGGAAAAAATTTAAGTTTTGTTGTCATCAAGGGTCTGCCAAAACTTGAAGGACGCATTCACAATCTACCAGGAACTGTATTTGCTGGCGATTTAAGACTTCTTAGGTTGGAACTCATAAATCAATCAGACTACTCTGTGAAGAAAATGAAAATGGCAATCAGTCACCCAAGATTCTTTATTCCAGGGAAAAATGAAGACATGAACATGAATTTTCCTAGCTGTCTTGAGAAGCAGAAAAAAATTATTAGTATGGATCCTTCTACTAATGTTCAGAAGTTCAAGAACCTTTTGTTTTATTTCCCTAATGATGTCACTATAGGAGGAGGTGCTACATTTTATTGGCCTCTTTGGTTTCACGCTGGTTGTTCTGGAAAGATTTCCGTGTATTTTTCTATATATTATGAAGTTGAAAGTTGTTCTACTGACATGATCTATAGGACATTGCGTATGCATTATGATTTGGAGGTGTTTCCATCACTCGATATATCAGTTCAAATAGCTCCATGCACTTCAAAGTTACAGGAGTACTTTGTACGGATGGATATTAAGAACATGACTTATACGGAGAATTTCTCTATGCAGCAATTATCATGTGCTGATGATCAGTTGGAGATTTTAACACTACCTGCAAATGAATCTATTTGCCCCTTGAAGGTTTTACATGCTGGCCAAGCATTATCTTGCTTCTTTAAGCTGAAGCAATGTAGAAATCTTGAAAATGGCACTGGGCTTTCTATTGATGGAAAGGATGCATTGTTTGATGCTAAGAACAACATGAAAGTTCTACTTGATTCATCTAGAACTCCTTTGATAGAATTTCACCAATATGAAAGATATCACCAAGAAAAAACTGTCCAGGGGGCTAACAGCAATATTGACTTCATCCTGATTTCCGAGCTGCAAGAAAAAAGTTCTTGTACAGAATTACAGCCAACGCTTTTATCCCATCATGCATGCCATTGCATCATCACTAGCACGATCCCCATATGGTGGCTTTTGGAGGGACCTCGTGGAATAAGCCTTGATTTTTATTCACTTCCCTTTCACGAACTCGATTTCGAATTAACAATCCACAACTGTACAAAGACCGAAGTTTTTGTTAGAATCGCCGCTCACGATATCATTCCTGAAACAAAGCTTTCGGACTTGATCTCCGATTCCGGCATCAACCACGGAGGGTGGAAGGACATTTCTCTTCCAAATAACGAGAAGACGGTCTCAAACATTGAAGGATTGATTCAATCTCACAAAACTCCGCCGCCGCCATCTCTTACACAAAGCATTTCCCCGTATATTTGGTGTGCTGCAAGCTCCACGTCGGTCAAGTTGCAGCCTTCATCCACTGCTAGGGTTCCTCTTAGGATCTGTATTTTCTCTCCGGGGACGTATGATCTGTCGAGTTATGAATTGCACTGGAATTTTTCATCTTCCAGTGCCAAGGAAGCAGCAGGGAGAGGATTGGGATCTGGTGTGAGCAGAGGGCATCCATTCTACCTTACAGTCATCCAATCATCTAATAAAATTATGTGAATTATGGAACTGCCTATAAGTACATGGACGCTTGCTCTTGAAAATTTCACATGCATAGCACTTTATAAATTGCATATGCAGCTGGCAATCTTCTATGTTTATGCTGCTATCCATTCAACCTTATACATATGTAAAGAATCTCACCCCGTTTATTGATTAAAAAACATCTCAAAGTCTGGTGTTCAATGTATATATAATGAGAGGGTGATTTATCTGTAATTAGGTTTGGATGATATGTAGATCTTGAAGATTTGAGTGCTATGCTATGAAAGTAAATCACCTTTTTTTTCTTAAATTTATCGTCTGAGGCAGTCAACATGTTCTGAATTATTCATCATTTATTCTGTTAATTATTTTGAATTTTTCTATTCAAGTTTTGAATTAATAAATGATTTGAGATTTATCAGCTGAA

Network for GWHGAAEX009988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12739.6	TRAPPC-Trs85	168	523	1.00E-79

Protein Sequence

>GWHPAAEX009988
MVMLMDPIRSLLGRMLLEEISPVVMVLSTPLAEEACIKNGLNFVEMLLPFSVFNKIDVPVRTASDQPHRLQMLKLRLVYAFEVHQKDYKDAEDHLKQLVIEAAKASLSDLQPEPAQLEAILNETEPNFLPSWIQIFNKELRKAISFSEHEAFDHPVACLLVVSTKDAQPINRFVDLFNTGQLPSLFNDGAMDPKILKQYLLLHDNTDGTMDRATGIIAEMRSTFGSTDCRLLCINSSTDENGELKDNPWLNVKAHLSDNQKIGSFLNVDDLFEIKDFMQELCSKHIIPYMEQKIRYLNQQVSATRKGFRNQIKNLWWRKGKEDASEIASGQMYTSSSIESQIRVLADHAFILGDYELALSNYRLLSADYKLDKAWKRYAGVQEMMGLAYFMLDQSRKDSEFCMEIAFNTYLKLVPLAQRNATRCGLWWAEMLKARGQYKEAASIYFRISSEEPPLHGAVLLEQASYSYLFSKPPMLCKYGFHLVLSGNRYYVSDQIPHALRTYINALLVYRAIPWNFIHDHVHFNIARWYSFVGIFEASLEHLLEVLACSHQSLITQELFLGTFFQIVETMGKIFEVNRLPLPVFNMSSVKVVYEDHRTYASIADVNVNENTWKSLEEEIVPLTSTIKSNWLESETKLSLKTYDDSRVCVVGEAIKLHIEFKNPLQIPISISGISLICDIFKKSEETIFDGDISCSVDAEELKEAPSCRNRISDAASLVVSEFDLVLGGGEVKRIQVDATPQIEGVLKILGVRWKLSEFVVGYHYFEPYTLKKHKKGKQVSGNWSGKNLSFVVIKGLPKLEGRIHNLPGTVFAGDLRLLRLELINQSDYSVKKMKMAISHPRFFIPGKNEDMNMNFPSCLEKQKKIISMDPSTNVQKFKNLLFYFPNDVTIGGGATFYWPLWFHAGCSGKISVYFSIYYEVESCSTDMIYRTLRMHYDLEVFPSLDISVQIAPCTSKLQEYFVRMDIKNMTYTENFSMQQLSCADDQLEILTLPANESICPLKVLHAGQALSCFFKLKQCRNLENGTGLSIDGKDALFDAKNNMKVLLDSSRTPLIEFHQYERYHQEKTVQGANSNIDFILISELQEKSSCTELQPTLLSHHACHCIITSTIPIWWLLEGPRGISLDFYSLPFHELDFELTIHNCTKTEVFVRIAAHDIIPETKLSDLISDSGINHGGWKDISLPNNEKTVSNIEGLIQSHKTPPPPSLTQSISPYIWCAASSTSVKLQPSSTARVPLRICIFSPGTYDLSSYELHWNFSSSSAKEAAGRGLGSGVSRGHPFYLTVIQSSNKIM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.510
SRP064423	SRR2545915	Juvenile tuber	21.790
SRP108465	SRR5643513	five period of Gastrodia elata	13.450
	SRR5643514	five period of Gastrodia elata	15.430
	SRR5643515	five period of Gastrodia elata	13.830
	SRR5643524	five period of Gastrodia elata	15.980
	SRR5643525	five period of Gastrodia elata	10.600
	SRR5643528	five period of Gastrodia elata	9.920
	SRR5643658	five period of Gastrodia elata	13.060
	SRR5643659	five period of Gastrodia elata	14.590
	SRR5643660	five period of Gastrodia elata	14.870
	SRR5643661	five period of Gastrodia elata	13.520
	SRR5643662	five period of Gastrodia elata	12.930
	SRR5643663	five period of Gastrodia elata	15.870
	SRR5643664	five period of Gastrodia elata	16.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.030
SRP279888	Gastro	Gastrodia elata tuber	18.25
	Juven	Juvenile tuber	25.04
	Mother_Gastro	Mother tuber of Gastrodia elata	16.97
	Mother_Juven	Mother tuber of Juvenile	26.06