Detail information of GWHGAAEX009989/evm.TU.scaffold_262.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294055775|ref|YP_003549433.1| | 3.00E-10 | nuclear protein SET [Coraliomargarita akajimensis DSM 45221] |
| KOG | KOG1082 | 2.00E-98 | Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing |
| nr | gi|695051687|ref|XP_009413878.1| | 1.02E-128 | PREDICTED: histone-lysine N-methyltransferase SUVR3 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SRV2|SUVR3_ARATH | 1.00E-85 | Histone-lysine N-methyltransferase SUVR3 |
| trEMBL | tr|M0TS33|M0TS33_MUSAM | 6.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P20300_001} |
| TAIR | AT3G03750 | 2.00E-98 | SET domain protein 20 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000260 | 524448 | 532926 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009989
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05033.15 | Pre-SET | 54 | 168 | 1.60E-07 |
| PF00856.27 | SET | 187 | 308 | 2.30E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11433 | SETMAR | Metabolic pathways | map01100 |
| Lysine degradation | map00310 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0034968 | Biological Process | histone lysine methylation |
| GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.550 |
| SRR2545915 | Juvenile tuber | 3.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.500 |
| SRR5643514 | five period of Gastrodia elata | 7.580 | |
| SRR5643515 | five period of Gastrodia elata | 6.020 | |
| SRR5643524 | five period of Gastrodia elata | 7.210 | |
| SRR5643525 | five period of Gastrodia elata | 10.400 | |
| SRR5643528 | five period of Gastrodia elata | 9.160 | |
| SRR5643658 | five period of Gastrodia elata | 10.150 | |
| SRR5643659 | five period of Gastrodia elata | 7.670 | |
| SRR5643660 | five period of Gastrodia elata | 9.130 | |
| SRR5643661 | five period of Gastrodia elata | 8.640 | |
| SRR5643662 | five period of Gastrodia elata | 9.460 | |
| SRR5643663 | five period of Gastrodia elata | 9.370 | |
| SRR5643664 | five period of Gastrodia elata | 6.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.84 |
| Juven | Juvenile tuber | 15.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.18 | |
| Mother_Juven | Mother tuber of Juvenile | 10.94 |