Detail information of GWHGAAEX009990/evm.TU.scaffold_262.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2150 | 0 | CCR4-NOT transcriptional regulation complex, NOT5 subunit |
| nr | gi|743873027|ref|XP_010906714.1| | 0 | PREDICTED: CCR4-NOT transcription complex subunit 3-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q52JK6|VIP2_NICBE | 4.00E-11 | Probable NOT transcription complex subunit VIP2 (Fragment) |
| trEMBL | tr|M0SQV6|M0SQV6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P21430_001} |
| TAIR | AT5G18230 | 0 | transcription regulator NOT2/NOT3/NOT5 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000260 | 534786 | 581164 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009990
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04065.14 | Not3 | 4 | 236 | 3.80E-83 |
| PF04153.17 | NOT2_3_5 | 718 | 856 | 3.50E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12580 | CNOT3, NOT3 | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0030015 | Cellular Component | CCR4-NOT core complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.790 |
| SRR2545915 | Juvenile tuber | 46.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.040 |
| SRR5643514 | five period of Gastrodia elata | 37.080 | |
| SRR5643515 | five period of Gastrodia elata | 39.440 | |
| SRR5643524 | five period of Gastrodia elata | 40.530 | |
| SRR5643525 | five period of Gastrodia elata | 29.620 | |
| SRR5643528 | five period of Gastrodia elata | 28.690 | |
| SRR5643658 | five period of Gastrodia elata | 30.890 | |
| SRR5643659 | five period of Gastrodia elata | 43.500 | |
| SRR5643660 | five period of Gastrodia elata | 43.110 | |
| SRR5643661 | five period of Gastrodia elata | 37.620 | |
| SRR5643662 | five period of Gastrodia elata | 40.540 | |
| SRR5643663 | five period of Gastrodia elata | 41.030 | |
| SRR5643664 | five period of Gastrodia elata | 41.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.13 |
| Juven | Juvenile tuber | 32.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.93 | |
| Mother_Juven | Mother tuber of Juvenile | 29.86 |