Gene detail

Detail information of GWHGAAEX009993/evm.TU.scaffold_263.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|269127362\|ref\|YP_003300732.1\|	1.00E-25	metallophosphoesterase [Thermomonospora curvata DSM 43183]
KOG	KOG0305	0	Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits
nr	gi\|743775453\|ref\|XP_010918104.1\|	0	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Elaeis guineensis]
Swissprot	tr\|Q9SZA4\|CDC21_ARATH	0	Cell division cycle 20.1, cofactor of APC complex
trEMBL	tr\|M0RUS7\|M0RUS7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23470_001}
TAIR	AT4G33270	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000256	97926	101034	+

Transcript Sequence
>GWHTAAEX009993 TTTTGAATCTCAGCGTCGTCTCAGGCACGAAGAGAAAAAAAGTCGGCAATAACTGCGTTCAGTTTTTTCTTTTAAGCCCGTTCTTCGCACTTCGAAGAAGAAAGATCTTGCCTACTTTTTCTCGATTAATTGATTTATTTGCAGTGCTTCTTTCTTGAATATTCTGCACTTTGAAGGACAAGGATCTTTACCAATTTTACATCGTTTAACTGATTTTTTTGCAGGGTTTCTCTAATTGTTATTAATTTATTTATTTATTTCGTATTTGTAGTCCTTTCTTTTGCTTTGATCTAACAAATGGATGTAGGAAATTTTAATTATTCTTTGTTGACATCCACTGAGAAGACTCATTCAAGGCCTCGCCAACCCCTCACGAGAGTTGGATCCACAGTGTACATTCCCTCTCTCCGCACTTCTTCCAATCCATCTTCGTATAGGCAAAGCGGAGACAGGTTTATACCGGATAGATCTGCAATGGATTTTGATGCTGCCCGCTACTTGTTAAGTCAACCAAGAAAAGAAAAGGAGAATGCTGAAGTTGTTTCACCTGCAAAAGAGGCCTATCGCAAGCTGCTTGCTGAGACCCTATTGAACAACAGAACCAGGATCTTGGCATTCAACAGAAAACCTCTAGTTTCAACCGATTCAATGCTTTCCGCAATTTCTGATGTTTCTTCTACTACCCAAAACAAGATTAGCAAAACCAAAAGATACATTCCACAGTCAGCAGAGAGGACATTAGATGCTCCAGATCTGGTGGACGACTTCTATCTGAATCTGCTTGATTGGGGAAGTAGAAACGTTCTTTCCATTGCTCTTGGTAACACCGTTTACTTGTGGTATGCTTCGGAAGGTTCAACCTCTGAGCTTGTGACTATTGATGAAGATCTTGGTCCAGTTACCAGTGTTAGCTGGGCTCCTGATGGTCAGCACATTGCCATTGGATTGAACAACTCTGAAGTTCAACTGTGGGATTCAACCTCATCTCGACTTTTGAGAACTCTGAAAGAAATACATGGATCTCGTGTTGGAACCCTTTCTTGGAACGACAACATCCTCACAACTGGCGGAATGGACGGGAAGATTGTGAACAATGATGTGAGGATAAGAAAGCATGAAGTTCATACTTTCAGAGGTCACCAACAAGAAGTGTGCGGTTTGAAATGGTCTGCCTCAGGCAAGCATCTAGCAAGCGGTGGAAATGACAATTTGATTCATATCTGGGAATCCTCCATGTCTGCCTCTTCGCTCTCAGCACCTGCAAATCAAAATCAATGGCTTCATAGATTTGATGGCCACAATGCAGCAGTTAAGGCTCTGGCTTGGTGCCCTTTCCAGAGTAATTTGCTTGCTTCTGGCGGAGGTGGAACTGATCGTTGTATCAAATTTTGGAATACACTCACGGGAAGTTGCTTGAATTCAGTTGACACCGGCTCTCAGGTTTGTGGGCTGTTATGGAATAAAAATGAGCGTGAACTGCTGAGCTCCCATGGCTTTACTCAGAACCAGCTCACATTGTGGAAGTATCCATCAATGGTGAAGGTTGCTGAGCTCAGTGGACATACGTCAAGAGTTCTTTATATGACTCAGAGCCCTAATGGATGCACGGTGGCGACTGCAGCTGGTGACGAGACATTGAGATTCTGGAATGTGTTTGGGAATCCAGAAGCGGACAAGCCCGCAACTAAGACGAAGTGCCGGGAACCGTTTAGTAATTTTAGCCGAATCCGATGAGAGTTTCTCATCTGGGGAGAGAAAGAACTGTTAGAGTTCTCTTATGTGGAATTTGTATTCTTTGGTCTCAATATTTATAAAGATTTGTGCTTCATCTCTCATGAACGAAATCCTCTCCTCCTCCTTCAAGGTGATCGCTGTAGTTGTGCCAATTAATTAAAGATGCCATGAAACAACAACCTCTTTGAAGAAATCGAAGTCTAAGAATTGCATACAAGATGAAGTTTGCACATTGAAACTAGCATATTTTGTATTGCATACAAGATAAAGTTTGCAAATCATTGAAACTATGTATTTTGATCGTACAGTTATCTGCACATTGCTTTTTCTTGTGGGAGCCAGTTCTTTGAATAAGTGTTGCCATTAAAAATAGTTGAACATGGT

Network for GWHGAAEX009993

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.6	ANAPC4_WD40	195	252	1.20E-06
PF00400.31	WD40	274	309	1.00E-07
PF00400.31	WD40	327	366	0.00019
PF00400.31	WD40	416	451	0.011

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03363	CDC20	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.290
SRP064423	SRR2545915	Juvenile tuber	0.200
SRP108465	SRR5643513	five period of Gastrodia elata	3.400
	SRR5643514	five period of Gastrodia elata	6.230
	SRR5643515	five period of Gastrodia elata	2.200
	SRR5643524	five period of Gastrodia elata	4.170
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.040
	SRR5643658	five period of Gastrodia elata	0.030
	SRR5643659	five period of Gastrodia elata	0.210
	SRR5643660	five period of Gastrodia elata	0.200
	SRR5643661	five period of Gastrodia elata	0.300
	SRR5643662	five period of Gastrodia elata	0.130
	SRR5643663	five period of Gastrodia elata	0.150
	SRR5643664	five period of Gastrodia elata	0.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.200
SRP279888	Gastro	Gastrodia elata tuber	0.11
	Juven	Juvenile tuber	0.20
	Mother_Gastro	Mother tuber of Gastrodia elata	0.56
	Mother_Juven	Mother tuber of Juvenile	0.25