Detail information of GWHGAAEX009999/evm.TU.scaffold_263.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|264680920|ref|YP_003280830.1| | 1.00E-24 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| KOG | KOG1081 | 3.00E-115 | Transcription factor NSD1 and related SET domain proteins |
| nr | gi|743826324|ref|XP_010933257.1| | 0 | PREDICTED: histone-lysine N-methyltransferase ASHH3 [Elaeis guineensis] |
| Swissprot | tr|Q945S8|ASHH3_ARATH | 2.00E-130 | Histone-lysine N-methyltransferase ASHH3 |
| trEMBL | tr|M0S7A9|M0S7A9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12180_001} |
| TAIR | AT2G44150 | 3.00E-115 | histone-lysine N-methyltransferase ASHH3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000256 | 162795 | 192515 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009999
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00856.27 | SET | 134 | 239 | 3.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11423 | SETD2 | Metabolic pathways | map01100 |
| Lysine degradation | map00310 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.680 |
| SRR2545915 | Juvenile tuber | 25.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.430 |
| SRR5643514 | five period of Gastrodia elata | 24.430 | |
| SRR5643515 | five period of Gastrodia elata | 22.120 | |
| SRR5643524 | five period of Gastrodia elata | 27.490 | |
| SRR5643525 | five period of Gastrodia elata | 25.570 | |
| SRR5643528 | five period of Gastrodia elata | 20.710 | |
| SRR5643658 | five period of Gastrodia elata | 20.890 | |
| SRR5643659 | five period of Gastrodia elata | 25.750 | |
| SRR5643660 | five period of Gastrodia elata | 24.790 | |
| SRR5643661 | five period of Gastrodia elata | 25.980 | |
| SRR5643662 | five period of Gastrodia elata | 21.580 | |
| SRR5643663 | five period of Gastrodia elata | 23.390 | |
| SRR5643664 | five period of Gastrodia elata | 18.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.16 |
| Juven | Juvenile tuber | 35.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.55 | |
| Mother_Juven | Mother tuber of Juvenile | 35.32 |