Gene detail

Detail information of GWHGAAEX010002/evm.TU.scaffold_263.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|83590752\|ref\|YP_430761.1\|	5.00E-82	DEAD/DEAH box helicase [Moorella thermoacetica ATCC 39073]
KOG	KOG1123	0	RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2
nr	gi\|695077552\|ref\|XP_009386121.1\|	0	PREDICTED: DNA repair helicase XPB1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q38861\|XPB1_ARATH	0	DNA repair helicase XPB1
trEMBL	tr\|M0U6Z3\|M0U6Z3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP06820_001}
TAIR	AT5G41370	0	homolog of xeroderma pigmentosum complementation group B 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000256	318546	385622	-

Transcript Sequence
>GWHTAAEX010002 GCTTTCTTATTTCATTCTTTTTTTTTCTGAGCCTTAACTGCCGAACGGAAGTGGATCAAATTCTACCTAGTTCGAAACCCAACTGGCCGTCATCTCCTCCTCTCACATCGCCGCCGCCGAGCGCCATCCCAGCGCGAGAACCGTAGCTCCCTGCCTTAGCCACTTCAGGGCCACTCCAAGAGCATCGCTGGGAAGGTAGCAAACTAGGTTGTTCGATCCCATGCTCCTCCAGATTACCTTAAACATCACTGGAGAGCCACTGAAGTCTCATCGCCAGACTGTCCAAACTCAACCCGCCGCCGACCTTAGACCCTAGCCTGCAATTCCGCTTTCCGTCTTCTGCTGCCACGCTTACCTGTGCTACTGCGGCCACCAATTTGGTGATTCAACCTCCTCCATCTTACGCTTCCGAATCTGGCAATCAAACATTTGTGTATTTAGATCACGTTGTATCTATTTTCTCCATATTTATAAATGCATGAGCATAGAGTACCTTCAACCAAACAGTCCCTTAATCAATTACCAAGTGACAGAGGGCGTCCCAGCAAGAAGCTAAAAATCTCCTCTAAGGCGGCCCCTTTTGTTGATGATGGTGAATTCGATCATGCAGAAGATTTTGATGAGGATAGCCGCCAATCTGAGAAAGAAACAAGCAAAAGGGATTTCACTAAGCTTGAGTTGAAGCCCGACCATTCTAATCGACCCCTTTGGGCATGTGCTGATGGGCGCATTTTCCTTGAGACGTTCTCTCCGCTTTACAAACAGGCCTATGACTTCCTTATTGCGATTGCTGAGCCAGTTTGCAGGCCAGAGTCCATGCATGAGTACAACCTTACACCGCATTCACTTTATGCTGCTGTCTCTGTTGGGCTTGAGACAGAAACTATCATTAATGTTCTTAACAAGTTGTCTAAGACTAAGTTGCCTAAAGAGATGATAGATTTTATCCATGGATCTACTGCAAATTATGGAAAAGTCAAACTGGTGCTTAAAAAGAATAGGTATTTTATAGAGTCACCCTTTCCCGAGGTGTTGAAGACGTTGCTCAAGGATGATGTTATCTCTAAATCAAGGGTTTCATCCGAGGATGATCGAGCGAGTGAGCCTTTTTCGATAAGCAAGGCTCCCGGAGAGTTGGATAATCATAATGGGCTGTTGGATGGAACTGATTTAGTTGCTGCTGCTGAGGAAAAGGAAACTCATTCTTTTGAGATTGACCCTTCGCAGGTGGAGAATGTAAAACAAAGATGCTTGCCAAATGCCTTGAATTACCCTATGCTTGAGGAATATGATTTTCGTAATGATACAGTCAATCCTGACTTGAACATGGAATTGAAACCTCAAGCGCAACCAAGGCCATACCAAGAAAAGAGTCTTAGCAAAATGTTTGGAAATGGAAGAGCAAGATCTGGTATTATCGTACTACCGTGTGGTGCTGGAAAGTCATTGGTGGGTGTTTCTGCAGCATGTCGAATAAAGAAAAGCTGTCTTTGCTTGGCTACCAATGCTGTTTCTGTTGATCAATGGGCTTTTCAGTTCAAGCTTTGGTCTACTATTAGAGATGATCAGATCTGTCGTTTCACGTCTGATAACAAAGAAAAGTTCCGAGGTAATGCTGGTGTTGTTGTGACAACTTACAATATGGTTGCATTCGGTGGCAAACGCTCAGAAGATTCTGAAAAAATCATTGAAGAAATAAGGAATAGAGAGTGGGGTTTACTTCTCATGGACGAGGTGCATGTTGTTCCTGCACACATGTTTCGTAAAGTCATTAGTATAACAAAATCACATTGCAAACTCGGACTTACTGCAACACTGGTTAGAGAGGATGAACGCATAACAGATTTGAACTTCCTTATTGGGCCTAAACTTTATGAAGCTAACTGGCTTGACCTAGTAAAGGGAGGATTCATAGCAAATGTTCAGTGTGCTGAAGTATGGTGTCCCATGACAAAAGAGTTTTTTGCAGAGTATCTGAAAAAGGAAAACTCTAAGAAGAAACAGGCACTATACGTCATGAATCCCAATAAATTCAGGGCTTGTGAGTTCTTAATTCGCTTTCATGAGCAACAGCGTGGAGATAAGATTATTGTTTTTGCAGATAATCTTTTTGCGCTCACAGCATATGCGATGAAACTTAGGAAACCTATGATCTATGGTGCAACTAGCCACCAGGAAAGAACGAGAATCCTTCAAGCATTTAAACATAGTCCTGATGTTAATACAATTTTTTTATCCAAGGTAGGCGACAACTCGATCGATATTCCAGAAGCCAATGTGATAATACAAATATCGTCTCATGCGGGTTCTCGTCGTCAAGAAGCTCAGCGATTAGGCCGTATTCTTAGGGCAAAGGGTCGTCTGCAAGACAGAATGGCTGGCGGGAAAGAAGAGTACAATGCTTTCTTCTATTCTTTAGTGTCCACAGATACACAGGAAATGTATTATTCTACTAAAAGGCAGCAATTTTTGATTGATCAAGGGTATAGTTTCAAGGTAATTACCAGCTTGCCGCCTCCTGATTCAGGACCAGAACTGAGTTATTATCACTTCAATGAGCAGCTTGATCTCCTGCACAAGGTTTTGAATGCGGGAGATGATGCGGTGGGTCTCGAGCAGCTAGAAGAGGATGCGGATGACATCACTCTTCTCAAGGCTCGGCGTTCCGTGGGGTCTATGAGTGCACTGTCCGGAGCTGCTGGAATGGTCTACATGGAGTACAACACTGGGGGGCATGGCAAGAAGCCGGCACATGGCCAGACAAAAACTAAACTAAAGGACCCTTCCAAGAGGCACGTTCTATTCAAGAAGCGCTTTGGATGAAGCTCTTATTTTTTTCCTTTGCAAGCTTGTCTTAATCTGGCATCTCTTGTTTACAACATTTTACTTATTATTACAGATAAAATTATTGTATAATTTGTAACCCATCGAAGATGTGCTTGTCAGATCATTGTTATTCTATAAATATATAATAAATACTAACTGATCATTTTGTGAAATAATGCAAATATAATATATATTTAAAAGATCACATCAATGGCAAGTTGCAATGCATTGTGTAGCA

Network for GWHGAAEX010002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13625.5	Helicase_C_3	78	201	8.10E-35
PF04851.14	ResIII	292	448	2.30E-14
PF16203.4	ERCC3_RAD25_C	474	721	3.50E-115

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10843	ERCC3, XPB	Basal transcription factors	map03022
K10843	ERCC3, XPB	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006367	Biological Process	transcription initiation from RNA polymerase II promoter
GO:0006289	Biological Process	nucleotide-excision repair
GO:0003678	Molecular Function	DNA helicase activity
GO:0003677	Molecular Function	DNA binding
GO:0016787	Molecular Function	hydrolase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	90.130
SRP064423	SRR2545915	Juvenile tuber	65.240
SRP108465	SRR5643513	five period of Gastrodia elata	38.660
	SRR5643514	five period of Gastrodia elata	39.360
	SRR5643515	five period of Gastrodia elata	31.740
	SRR5643524	five period of Gastrodia elata	38.050
	SRR5643525	five period of Gastrodia elata	31.560
	SRR5643528	five period of Gastrodia elata	32.480
	SRR5643658	five period of Gastrodia elata	37.260
	SRR5643659	five period of Gastrodia elata	31.030
	SRR5643660	five period of Gastrodia elata	28.460
	SRR5643661	five period of Gastrodia elata	31.400
	SRR5643662	five period of Gastrodia elata	28.640
	SRR5643663	five period of Gastrodia elata	31.090
	SRR5643664	five period of Gastrodia elata	32.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	49.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.240
SRP279888	Gastro	Gastrodia elata tuber	46.94
	Juven	Juvenile tuber	49.85
	Mother_Gastro	Mother tuber of Gastrodia elata	37.38
	Mother_Juven	Mother tuber of Juvenile	48.91