Detail information of GWHGAAEX010007/evm.TU.scaffold_263.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16494.00E-118SWI-SNF chromatin remodeling complex, Snf5 subunit
nrgi|700254730|gb|AIU48986.1|2.47E-147bushy growth protein, partial [Iris japonica]
Swissprottr|P93045|BSH_ARATH1.00E-118Chromatin structure-remodeling complex protein BSH
trEMBLtr|A0A097PLU6|A0A097PLU6_9ASPA9.00E-148Bushy growth protein {ECO:0000313|EMBL:AIU48986.1} (Fragment)
TAIRAT3G175904.00E-118transcription regulatory protein SNF5, putative (BSH)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000256573330593453+
Transcript Sequence

Network for GWHGAAEX010007

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04855.11SNF510831.50E-16
PF04855.11SNF5912317.90E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11648SMARCB1, SNF5, INI1 Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0006338Biological Processchromatin remodeling
GO:0000228Cellular Componentnuclear chromosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms83.570
SRR2545915Juvenile tuber60.520
SRP108465SRR5643513five period of Gastrodia elata27.950
SRR5643514five period of Gastrodia elata25.070
SRR5643515five period of Gastrodia elata25.170
SRR5643524five period of Gastrodia elata23.720
SRR5643525five period of Gastrodia elata27.720
SRR5643528five period of Gastrodia elata26.600
SRR5643658five period of Gastrodia elata35.490
SRR5643659five period of Gastrodia elata25.590
SRR5643660five period of Gastrodia elata29.790
SRR5643661five period of Gastrodia elata27.860
SRR5643662five period of Gastrodia elata26.590
SRR5643663five period of Gastrodia elata26.440
SRR5643664five period of Gastrodia elata32.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.230
SRR6049655Rhizomagastrodiae_C368-T10_good_132.540
SRR6049656Rhizomagastrodiae_C368-T07_good_132.910
SRR6049657Rhizomagastrodiae_C368-T07_good_143.140
SRR6049658Rhizomagastrodiae_C368-T04_good_147.440
SRR6049659Rhizomagastrodiae_C368-T04_good_147.220
SRR6049660Rhizomagastrodiae_C368-T01_good_135.820
SRR6049661Rhizomagastrodiae_C368-T04_good_136.350
SRR6049662Rhizomagastrodiae_C368-T01_good_125.890
SRR6049663Rhizomagastrodiae_C368-T01_good_134.750
SRR6049664Rhizomagastrodiae_C368-T10_good_132.870
SRR6049665Rhizomagastrodiae_C368-T10_good_132.870
SRP279888GastroGastrodia elata tuber 42.19
JuvenJuvenile tuber38.68
Mother_GastroMother tuber of Gastrodia elata 32.39
Mother_JuvenMother tuber of Juvenile 37.80