Detail information of GWHGAAEX010009/evm.TU.scaffold_263.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4639 | 1.00E-16 | RNase P/RNase MRP subunit POP5 |
| nr | gi|743778005|ref|XP_010919449.1| | 7.33E-72 | PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Elaeis guineensis] |
| Swissprot | tr|Q6AWV1|POP5_ARATH | 3.00E-54 | Probable ribonuclease P/MRP protein subunit POP5 |
| trEMBL | tr|B9IDE0|B9IDE0_POPTR | 4.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:EEF05471.1} |
| TAIR | SPCC830.09C | 1.00E-16 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000256 | 609209 | 613895 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010009
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01900.18 | RNase_P_Rpp14 | 113 | 221 | 8.50E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03537 | POP5 | RNA transport | map03013 |
| Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016070 | Biological Process | RNA metabolic process |
| GO:0008033 | Biological Process | tRNA processing |
| GO:0004540 | Molecular Function | ribonuclease activity |
| GO:0004526 | Molecular Function | ribonuclease P activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.480 |
| SRR2545915 | Juvenile tuber | 52.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.760 |
| SRR5643514 | five period of Gastrodia elata | 41.820 | |
| SRR5643515 | five period of Gastrodia elata | 37.430 | |
| SRR5643524 | five period of Gastrodia elata | 38.190 | |
| SRR5643525 | five period of Gastrodia elata | 49.010 | |
| SRR5643528 | five period of Gastrodia elata | 51.740 | |
| SRR5643658 | five period of Gastrodia elata | 53.960 | |
| SRR5643659 | five period of Gastrodia elata | 32.310 | |
| SRR5643660 | five period of Gastrodia elata | 29.230 | |
| SRR5643661 | five period of Gastrodia elata | 30.090 | |
| SRR5643662 | five period of Gastrodia elata | 35.700 | |
| SRR5643663 | five period of Gastrodia elata | 28.260 | |
| SRR5643664 | five period of Gastrodia elata | 33.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 60.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 45.24 |
| Juven | Juvenile tuber | 48.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 72.86 | |
| Mother_Juven | Mother tuber of Juvenile | 63.20 |