Gene detail

Detail information of GWHGAAEX010013/evm.TU.scaffold_265.2

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1990	5.00E-143	Poly(A)-specific exoribonuclease PARN
nr	gi\|743803524\|ref\|XP_010926941.1\|	1.87E-171	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q67XL4\|Y3544_ARATH	7.00E-45	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBL	tr\|I1PSE5\|I1PSE5_ORYGL	9.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA05G0029300.1}
TAIR	AT3G27550	5.00E-143	RNA-binding CRS1 / YhbY (CRM) domain protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000263	52336	71057	+

Transcript Sequence
>GWHTAAEX010013 ATCTTTTGAGTCATGTAGAATCTAATCATGTGGGCTATGAAGCGTTTTGAGGGGCATTTTTTGAAGGTTATGCCACTTTTATCAAGAACTTACCACTTGAATGACTGCACTTCGATTATTGCAAAAAATAGTCACCATGGCACTTGCTTATGTGGTTCAATCAGCTGTTTTCGTTTGATGTCTACACTAAGAAGAAGTGGCATTCAAGCTAAGGTACAGAGGAGAATTCAAAAAGAATCAGCAAAAATGCAGTTGGAGCATCGCCGGTCTAAAAGAATTCATAAAATGCTAATGACTGAGGATGAAAAGCTCATTTACAACTTAAGAAGGGCCAAGAAAAAGGTTGCTTTGCTCCTACAGAAGCTAAAAAAATATGAGCTGCCGGAGCTGCCTCCACCGGTACATGACCCAGAGCTCCTAACCTCGGAGCAGCTTCAAGCATACAAAAAGATCGGATTCAGAAACAAAAATTACGTGCCCGTCGGAGTTCGTGGAGTCTTTGGGGGCGTTGTTCAAAACATGCATCTTCACTGGAAGTTTCACGAGACGGTGCAAGTTTGCTGCGATAATTTCCCAAAGGAAAAGATCAGAGAGATGGCCACCATGATCGCAAGGCTGAGTGGTGGCATCGTGGTTAACATTCACAATGTAAAGACGATCATCATGTTTCGAGGGAGGAACTACAGACAACCAAAGAATCTGATACCCATTAATACTCTCACAAAAAGAAAGGCCTTGTTCAAGGCTAGGTTTGAACAGGCATTAGAATCTCAGAAACTAAACATCAAGAAAATAGAACAGCAGCTTCGTCGAAAAGGGCTAAATCCGGAGGACCCAATTGCCATGGCTAGCATTCAGAGAGTAGCTGCTACATTTTTCCGTGCCATCGATGAGAAACAAGGAACTCCATATGTTCTCCGTGAGGGCACGAAACCGATGACCCAGACTAAGGACGACGATCCGGTGGATGTTTTGGATGAACTGTCTCCTGAGTACAGCGACCAAGAAGAGCTTGATAAATTCATCGCCGAGATAGAGCAAGCTGCCGACTTGGAGTGGGAGAGAGAGGAAGCGGCGGAGAAAGAAGAAGCATCTAAGATAAGATACTGGGGCAAAGAGGATTTTGGGCATGGATCTAGGAACAGGAGGAATTCGGAATCGGAGGATGACAGGGAGCATCGAGGACGTTTCAGTGGATCTGATGGCGGAATCCGGAGAAATATGCCGAAGAAATGGGGAGAGGGTGCGGATATTGAGGAGGCATCCAGCGAGGAGTGGGATTCCGATGATGAAGTAGATGATGTGATAGCTGGAATTGAGAATGACTCAGCCTACTCTACTGGGGCAACAGGATGGAAGGATAGACGAGCTGCTGCTGAATTGGATGATGATTCATCAGACTTTGCTGGCTCCTCTGAGGATGTAAAGTGGGAATCAGAAGATGAAAGTGCAGTGCCATCTGCTAACAGGGATTATGTGGAAAGTGATGAAGATTAAGGCCATAAGGAAAACTATGGAAGGATTGAAGTCAATTGATTCTCAAAGATAGATGGGAGCAATTGCAGTGATTAGTGTTTAGGAGTAAGGATGGAAAATGAAGTGCATTTGACCGGTAAGTTTTGGTGATCAATTTGCTCAATCATATATATATTTGGAAATCATTTTGTATTGATTTGTTTTTTCTTAATTTATGAGATACCCTGCAATGAAAATGTTCCTTAAATACTTCCATGAAGTTTGAAAGTTTTTATATTTGTATAATCCACAAATATCTCAAATCATGGTATCTGATTTATCAAAAATAAAGGTAATTAAGACTCCTTAAAATTTCCCATACCAAAAGATTCATATTTTTTGTTATTGTAACAAGACTTTAAATATGAATGA

Network for GWHGAAEX010013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01985.20	CRS1_YhbY	131	215	9.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.570
SRP064423	SRR2545915	Juvenile tuber	38.140
SRP108465	SRR5643513	five period of Gastrodia elata	55.610
	SRR5643514	five period of Gastrodia elata	46.430
	SRR5643515	five period of Gastrodia elata	52.950
	SRR5643524	five period of Gastrodia elata	49.420
	SRR5643525	five period of Gastrodia elata	57.200
	SRR5643528	five period of Gastrodia elata	56.640
	SRR5643658	five period of Gastrodia elata	54.900
	SRR5643659	five period of Gastrodia elata	57.270
	SRR5643660	five period of Gastrodia elata	59.750
	SRR5643661	five period of Gastrodia elata	52.560
	SRR5643662	five period of Gastrodia elata	63.640
	SRR5643663	five period of Gastrodia elata	62.440
	SRR5643664	five period of Gastrodia elata	59.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.390
SRP279888	Gastro	Gastrodia elata tuber	46.54
	Juven	Juvenile tuber	52.63
	Mother_Gastro	Mother tuber of Gastrodia elata	65.34
	Mother_Juven	Mother tuber of Juvenile	56.31