Gene detail

Detail information of GWHGAAEX010017/evm.TU.scaffold_265.7

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|328949667\|ref\|YP_004367002.1\|	6.00E-101	DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884]
KOG	KOG0331	0	ATP-dependent RNA helicase
nr	gi\|672169353\|ref\|XP_008804703.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Phoenix dactylifera]
Swissprot	tr\|Q0D8N0\|RH53_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 53
trEMBL	tr\|M5XBE5\|M5XBE5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18833.1}
TAIR	AT3G22310	0	putative mitochondrial RNA helicase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000263	209513	220214	+

Transcript Sequence
>GWHTAAEX010017 AATATTTTCGTTTGCAAAAACCCTAACAACCCATTTTCTAGGGTTTAACTGCGCTCTGCAGTTCGTCATCAAACTTGTCCAAGATGAACTTTTTATTCCGGAGATCGGCTTCCATCGCCAAGACGACGGTGGCAAGGCAGGCTATTACCGCCCTAGTTTCATCCGATCACTCGCTGCTCCATGTCGCGACCCTTCAGGAGTCATCTTCGTCGCTTCTGGCTTGCTTTATTGGAAGACCGCATGGCTCTGCTGCGGAAACTGGAAGACCATTTTTGGTTGGTATCGGGCAGAGGGAGCTCCATTTCTCTGCGGCGCCTCTTGATTTTAGAGCTAGTGAGATTACTAGGGCAGAGTTCGCTGTCGATGAGTATTATGATGAAGGGAAGAGAAGTGATGACGGACTCGAGATTGCTAAGCTTGGAATCTCGCAGGATATTGTGTCGGCGCTTGCAAAAAAGAATATCACTCGGCTGTTTCCTATTCAGAGAGCAGTTCTTGAACCAGCAATGCAAGGGCGTGACATGATTGGCAGAGCTAAAACTGGAACTGGCAAAACACTTGCTTTTGGAATTCCAATTCTGGACAGCATTATTCGCTATAATGCCAAGCATGGGCGCGGACGAAATCCCTTAGCCTTGGTTTTAGCACCAACACGTGAGCTTGCTCGACAGGTGGACAAGGAATTCATGGAATCCTCTCAGCTGGACACATTATGCGTGTATGGTGGGGTCCCTATTCAACAGCAGATGAGAACTTTGAGCTACGGCATAGATGTTTTAGTTGGCACTCCTGGGAGAGTTATTGATTTACTTAAGCGAGGCGCCCTGAATTTGTCTGAGGTGCAATTTGTTGTTCTTGATGAAGCTGACCAGATGCTTGCTGTCGGATTTGCTGAAGATGTCGAGGTGATTTTGGATAAACTGCCAAAAAAACGTCAAAGTATGATGTTTTCAGCAACTATGCCGACCTGGATAAGAAAGGTTTCTCAGAAATACCTTGATAATCCAGTTACAATCGACCTTGTTGGTGAGTCAGACCAGAAGTTAGCCGAAGGAATTAGTCTTTATTCTATTGTGTCAGACAACTATAGCAAAGTATCAATTCTTGGGCCGCTAGTCAAGGAACATGCCAAAGGAGGGAAATGCATAATTTTTACCCAAACAAAACGCGATGCTGATCGTTTGGCTTATGCTATGGGCAGGAGTTATCCTTGCGAGGCTTTACATGGGGATATTTCCCAAAATCAGAGGGAGAGAACACTTGCCGGCTTCAGGGAGGGTCAGTTTAACATTTTGATTGCTACAGATGTTGCTGCTCGTGGATTGGATATTCCTAATGTTGATTTGGTGATTCACTATGAATTACCAAACAGTTCAGAACTCTTTGTTCATAGATCTGGTCGAACTGGAAGAGCTGGAAAGAAAGGAACTGCAATTCTTATATATACACGTGAGCAAGCTCGGGCAATGAGGGTCATTGAGCAAGATATTGGATGCAGATTCTCAGAGCTTCCTAGCATTGAAGCAGATGATGGGGGTGACCTGATTGGCCGTCTTGATTCTTTTGGAGGCAACAGAATGGGCAGCTCAGGGTTTGGTCGCAGTGGATTTAGCCGCGGAGGGCCTAGTCGCGGCGGTGGGTTTGGAAGTTCGGGAGGTGGGTTTGGAAGTTCATCTGGAAGGATGGGCGGATTTGGTAGTTCAGGGTCTGGCTCATCGGGTGGTTCAGGTTTTGGCCGCTCTGGAGGTTATGGCAATTCTGATTCGGGTTCAGGTCGCTCTGGAGGGTTTGGAGGATATGGATCAGGGTTTGGAAGATCTGGCGGCTTTGGTGGTTCGAATTCAGGCTTTGGAAAATCGGGCGGCTTTGGCGATTCTGGCGGGTTCGGAAACTCTGGTTCAAGGCAATCTGGCGGTTCTGGAAGATCCGGCGGCTTTGGCAGCCAGGATTACGGGTGGTCTAGTGACTTTGGGAACAAGAGTTCACGTCAGTTTGGAAGCTCGGGTGATTTTGGAAGTTCAGCAGGTGCCTCTGGCAATGATAATGGGAATTAGAGGAATAGTTGCCCTGGCCCTCATGAGTTTCAGACTTGTTAACTGCTCAGGCGGTGGATTTGTCATATGACATTGCTAAAGGTTGGCTACTGCAGACGAATTGGCAGATCCTCAGGTACTGCTTGCTACCCATAAGCACCAGCAATTAGCTTAATCCTGAATTTAAACGTATATATGAATATTTTCTCTGCTGTTACTGGGGGCGGGGAGAAATATGAAAAATATATATTTTGTTTTTTTACATATTTTGCTAGGGTAATAATATTTTGTGTTTTTATTAAGGAACAACATATCACTCTCCCTCCATGAACTCGGTTTGTAGGCTGAGCTGTTTTGCTTGCTTAATGTAATTTATTATATTTTGTCAGGCCGCATTTTTTATATTTCGTAATGATGATTCATGTTTTTATTGTATATTTATCAAGTTTATTTATATATTTTTCTCTTTTG

Network for GWHGAAEX010017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	131	299	3.50E-46
PF00271.30	Helicase_C	337	445	1.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.920
SRP064423	SRR2545915	Juvenile tuber	53.310
SRP108465	SRR5643513	five period of Gastrodia elata	56.800
	SRR5643514	five period of Gastrodia elata	49.490
	SRR5643515	five period of Gastrodia elata	40.010
	SRR5643524	five period of Gastrodia elata	47.510
	SRR5643525	five period of Gastrodia elata	33.310
	SRR5643528	five period of Gastrodia elata	20.820
	SRR5643658	five period of Gastrodia elata	14.810
	SRR5643659	five period of Gastrodia elata	97.870
	SRR5643660	five period of Gastrodia elata	107.920
	SRR5643661	five period of Gastrodia elata	92.090
	SRR5643662	five period of Gastrodia elata	94.230
	SRR5643663	five period of Gastrodia elata	87.080
	SRR5643664	five period of Gastrodia elata	98.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	66.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	64.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	67.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	74.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	81.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	79.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	64.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	64.840
SRP279888	Gastro	Gastrodia elata tuber	101.86
	Juven	Juvenile tuber	146.44
	Mother_Gastro	Mother tuber of Gastrodia elata	23.53
	Mother_Juven	Mother tuber of Juvenile	52.44