Detail information of GWHGAAEX010019/evm.TU.scaffold_265.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1246 | 0 | DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain |
| nr | gi|672195648|ref|XP_008776596.1| | 0 | PREDICTED: probable lysine-specific demethylase JMJ14 [Phoenix dactylifera] |
| Swissprot | tr|Q53WJ1|JM703_ORYSJ | 0 | Lysine-specific demethylase JMJ703 |
| trEMBL | tr|A0A0A0LJK2|A0A0A0LJK2_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN61269.1} |
| TAIR | AT1G08620 | 0 | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000263 | 236896 | 251633 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010019
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02375.16 | JmjN | 115 | 148 | 3.50E-16 |
| PF02373.21 | JmjC | 360 | 476 | 1.10E-44 |
| PF02928.15 | zf-C5HC2 | 583 | 635 | 7.00E-11 |
| PF05964.13 | FYRN | 976 | 1020 | 5.60E-08 |
| PF05965.13 | FYRC | 1027 | 1115 | 9.40E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.040 |
| SRR2545915 | Juvenile tuber | 13.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.460 |
| SRR5643514 | five period of Gastrodia elata | 9.750 | |
| SRR5643515 | five period of Gastrodia elata | 11.080 | |
| SRR5643524 | five period of Gastrodia elata | 9.140 | |
| SRR5643525 | five period of Gastrodia elata | 12.430 | |
| SRR5643528 | five period of Gastrodia elata | 12.970 | |
| SRR5643658 | five period of Gastrodia elata | 12.790 | |
| SRR5643659 | five period of Gastrodia elata | 14.140 | |
| SRR5643660 | five period of Gastrodia elata | 15.600 | |
| SRR5643661 | five period of Gastrodia elata | 13.620 | |
| SRR5643662 | five period of Gastrodia elata | 18.250 | |
| SRR5643663 | five period of Gastrodia elata | 14.760 | |
| SRR5643664 | five period of Gastrodia elata | 17.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.95 |
| Juven | Juvenile tuber | 8.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.50 | |
| Mother_Juven | Mother tuber of Juvenile | 12.48 |