Detail information of GWHGAAEX010020/evm.TU.scaffold_265.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-156 | FOG: PPR repeat |
| nr | gi|672108867|ref|XP_008787234.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Phoenix dactylifera] |
| Swissprot | tr|Q9FX24|PPR71_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g34160 |
| trEMBL | tr|K3XW01|K3XW01_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si006109m} |
| TAIR | AT1G34160 | 8.00E-156 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000263 | 252329 | 254192 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010020
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 143 | 169 | 0.28 |
| PF01535.19 | PPR | 244 | 265 | 0.23 |
| PF01535.19 | PPR | 272 | 301 | 0.00016 |
| PF01535.19 | PPR | 307 | 334 | 0.0071 |
| PF14432.5 | DYW_deaminase | 449 | 564 | 8.50E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.910 |
| SRR2545915 | Juvenile tuber | 1.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.160 |
| SRR5643514 | five period of Gastrodia elata | 3.880 | |
| SRR5643515 | five period of Gastrodia elata | 4.450 | |
| SRR5643524 | five period of Gastrodia elata | 3.580 | |
| SRR5643525 | five period of Gastrodia elata | 4.300 | |
| SRR5643528 | five period of Gastrodia elata | 3.870 | |
| SRR5643658 | five period of Gastrodia elata | 3.790 | |
| SRR5643659 | five period of Gastrodia elata | 7.330 | |
| SRR5643660 | five period of Gastrodia elata | 8.170 | |
| SRR5643661 | five period of Gastrodia elata | 8.480 | |
| SRR5643662 | five period of Gastrodia elata | 8.000 | |
| SRR5643663 | five period of Gastrodia elata | 7.150 | |
| SRR5643664 | five period of Gastrodia elata | 6.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.82 |
| Juven | Juvenile tuber | 4.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.94 | |
| Mother_Juven | Mother tuber of Juvenile | 3.41 |