Detail information of GWHGAAEX010023/evm.TU.scaffold_265.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427737263|ref|YP_007056807.1|2.00E-10WD40 repeat-containing protein [Rivularia sp. PCC 7116]
KOGKOG19630WD40 repeat protein
nrgi|743864821|ref|XP_010904674.1|0PREDICTED: WD repeat-containing protein 75 isoform X2 [Elaeis guineensis]
trEMBLtr|M0S7C7|M0S7C7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12360_001}
TAIRAT2G189000Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000263304552334610-
Transcript Sequence

Network for GWHGAAEX010023

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14552NAN1, UTP17, WDR75 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.680
SRR2545915Juvenile tuber33.600
SRP108465SRR5643513five period of Gastrodia elata23.910
SRR5643514five period of Gastrodia elata25.180
SRR5643515five period of Gastrodia elata20.660
SRR5643524five period of Gastrodia elata23.770
SRR5643525five period of Gastrodia elata16.740
SRR5643528five period of Gastrodia elata13.930
SRR5643658five period of Gastrodia elata17.270
SRR5643659five period of Gastrodia elata26.250
SRR5643660five period of Gastrodia elata25.570
SRR5643661five period of Gastrodia elata25.260
SRR5643662five period of Gastrodia elata22.280
SRR5643663five period of Gastrodia elata22.840
SRR5643664five period of Gastrodia elata22.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.350
SRR6049655Rhizomagastrodiae_C368-T10_good_132.160
SRR6049656Rhizomagastrodiae_C368-T07_good_128.190
SRR6049657Rhizomagastrodiae_C368-T07_good_129.030
SRR6049658Rhizomagastrodiae_C368-T04_good_126.960
SRR6049659Rhizomagastrodiae_C368-T04_good_130.840
SRR6049660Rhizomagastrodiae_C368-T01_good_132.120
SRR6049661Rhizomagastrodiae_C368-T04_good_127.690
SRR6049662Rhizomagastrodiae_C368-T01_good_128.500
SRR6049663Rhizomagastrodiae_C368-T01_good_129.710
SRR6049664Rhizomagastrodiae_C368-T10_good_129.240
SRR6049665Rhizomagastrodiae_C368-T10_good_129.240
SRP279888GastroGastrodia elata tuber 31.45
JuvenJuvenile tuber38.60
Mother_GastroMother tuber of Gastrodia elata 20.76
Mother_JuvenMother tuber of Juvenile 24.07