Detail information of GWHGAAEX010030/evm.TU.scaffold_265.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|84489671|ref|YP_447903.1| | 2.00E-40 | 30S ribosomal protein S13P [Methanosphaera stadtmanae DSM 3091] |
| KOG | KOG3311 | 3.00E-101 | Ribosomal protein S18 |
| nr | gi|743824336|ref|XP_010932756.1| | 3.96E-103 | PREDICTED: 40S ribosomal protein S18 [Elaeis guineensis] |
| Swissprot | tr|P34788|RS18_ARATH | 8.00E-102 | 40S ribosomal protein S18 |
| trEMBL | tr|W9R747|W9R747_9ROSA | 4.00E-103 | 40S ribosomal protein S18 {ECO:0000313|EMBL:EXB39391.1} |
| TAIR | AT4G09800 | 3.00E-101 | S18 ribosomal protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000263 | 550350 | 565128 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010030
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00416.21 | Ribosomal_S13 | 116 | 244 | 7.00E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02964 | RP-S18e, RPS18 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.750 |
| SRR2545915 | Juvenile tuber | 48.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 56.660 |
| SRR5643514 | five period of Gastrodia elata | 61.240 | |
| SRR5643515 | five period of Gastrodia elata | 46.980 | |
| SRR5643524 | five period of Gastrodia elata | 60.020 | |
| SRR5643525 | five period of Gastrodia elata | 20.940 | |
| SRR5643528 | five period of Gastrodia elata | 24.980 | |
| SRR5643658 | five period of Gastrodia elata | 18.630 | |
| SRR5643659 | five period of Gastrodia elata | 52.550 | |
| SRR5643660 | five period of Gastrodia elata | 54.460 | |
| SRR5643661 | five period of Gastrodia elata | 47.800 | |
| SRR5643662 | five period of Gastrodia elata | 44.650 | |
| SRR5643663 | five period of Gastrodia elata | 42.950 | |
| SRR5643664 | five period of Gastrodia elata | 40.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 60.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 60.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 53.08 |
| Juven | Juvenile tuber | 41.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.88 | |
| Mother_Juven | Mother tuber of Juvenile | 17.86 |